View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_high_2 (Length: 462)
Name: NF16496_high_2
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 25494892 - 25495336
Alignment:
| Q |
13 |
aatatcataacaagaaccaggtgggatagtataggttggacaaaatacaaacttgtaccccaaaccatgtttctgaatgttaaacttaccagttaggatt |
112 |
Q |
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| T |
25494892 |
aatatcataacaagaaccaggtgggatagtataggttggacaaaatacaaacttgtaccccaaaccatgtttctgaatgttaaacttcccagttaggatt |
25494991 |
T |
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| Q |
113 |
tcagattcttgatgatcttcatcaccaccaatacctatccatgcaggccaaccagcaacgattgcccaaatagaggattcaacacattcaggcttctcta |
212 |
Q |
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| T |
25494992 |
tcagattcttgatgatcttcatcaccaccaatacctatccatgcaggccaaccagcaactatagcccaaatagaggattcaacacactgaggcttctcta |
25495091 |
T |
|
| Q |
213 |
caaatgaaatattgagtgtagttcctgtaaagattataccagggcttattcctggtatgataaatttcacttgtaggccattcacaacctcagaataatc |
312 |
Q |
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| T |
25495092 |
caaatgaaatattgagtgtagttcctgtaaagattataccagggcttattcctggtatgataaatttcacttgtaggccattcacaacctcagaataatc |
25495191 |
T |
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| Q |
313 |
ttgaaatactgcaactggacatgttgagctttctgtatcatgaccaagctttactccaccacctgctgctccaaagataggtggcatgagatagtatctc |
412 |
Q |
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| T |
25495192 |
ttgaaatactgcaactggacatgttgagctttctgtatcatgaccaagctttactccaccacctgctgctccaaagataggtggcatgagatagtatctc |
25495291 |
T |
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| Q |
413 |
ccaccagggaaaatagggtttccatttgtgtccactattacttgt |
457 |
Q |
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| T |
25495292 |
ccaccagggaaaatagggtttccatttgtgtccactactacttgt |
25495336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 444
Target Start/End: Original strand, 24222258 - 24222409
Alignment:
| Q |
290 |
ccattcacaacctcagaataatcttgaaatactgcaactggacatgttgagctttctgtatcatgaccaagctttactccaccacctgctgctccaaaga |
389 |
Q |
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| T |
24222258 |
ccattgacaacctcagaataatcttgaagtacagtaagtggacattttgagttttttgtctta---ccaagcctcaatccaccaccagctgctccaaaga |
24222354 |
T |
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| Q |
390 |
taggtggcatgagatagtatctcccaccagggaaaatagggtttccatttgtgtc |
444 |
Q |
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| T |
24222355 |
ttgatggcataatatagaatgtgccaccaggaaaaatggggtttccatttgtgtc |
24222409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 20460847 - 20460985
Alignment:
| Q |
299 |
acctcagaataatcttgaaatactgcaactggacatgttgagctttctgtatcatgaccaagctttactccaccacctgctgctccaaagataggtggca |
398 |
Q |
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| T |
20460847 |
acctcagaataatcttgaagtacagtaagtggacatgatgagtttcctgtttca---ccaagctttactccaccaccagcagctccaaatatagatggct |
20460943 |
T |
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| Q |
399 |
tgagatagtatctcccaccagggaaaatagggtttccatttg |
440 |
Q |
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| T |
20460944 |
taacatagaatctactagaaaagaaaatagggtttccatttg |
20460985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 20493574 - 20493525
Alignment:
| Q |
245 |
attataccagggcttattcctggtatgataaatttcacttgtaggccatt |
294 |
Q |
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| T |
20493574 |
attataccaggacttattcctggtatggtgaatttcactggtagaccatt |
20493525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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