View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16496_high_4 (Length: 321)

Name: NF16496_high_4
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16496_high_4
NF16496_high_4
[»] chr1 (1 HSPs)
chr1 (10-303)||(49252125-49252418)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 49252125 - 49252418
Alignment:
Q  10 ataatacttttaaacattgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattcatg 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49252125 ataatacttttaaacactgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattaatg 49252224  T
Q  110 taaaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49252225 tagaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt 49252324  T
Q  210 ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttagaggttcaagaaggaaaggctaagg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49252325 ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttacaggttcaagaaggaaaggctaagg 49252418  T

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