View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16496_high_9 (Length: 253)

Name: NF16496_high_9
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16496_high_9
NF16496_high_9
[»] chr6 (1 HSPs)
chr6 (15-109)||(28963075-28963169)
[»] chr8 (2 HSPs)
chr8 (15-108)||(3442750-3442843)
chr8 (15-103)||(24115842-24115931)
[»] chr4 (1 HSPs)
chr4 (31-108)||(26683799-26683875)
[»] chr2 (1 HSPs)
chr2 (147-214)||(4745325-4745392)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 28963169 - 28963075
Alignment:
Q  15 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 109  Q
    |||||||||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28963169 atgaattagttaaaggaaagataaaaatccaaggtcagcaattcattcctaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 28963075  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 3442750 - 3442843
Alignment:
Q  15 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 108  Q
    |||||||||||||  ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||    
T  3442750 atgaattagttaatggaaagataaaaatccaagggcagcaattcattcgtaagttgtcgtgcatggtttgttctcgtgcaataaagcatttttc 3442843  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 24115842 - 24115931
Alignment:
Q  15 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcat-ggtttgctctcgtaccataaagcat 103  Q
    |||||||| ||||| ||||||||||||| |||| | ||||||||||||  |||||||||||||| |||||| ||||||||||||||||||    
T  24115842 atgaattaattaaatgaaagataaaaatccaagggaagcaattcattcgcaagttgtcgtgcatgggtttgttctcgtaccataaagcat 24115931  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26683799 - 26683875
Alignment:
Q  31 aaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 108  Q
    ||||||||||||||||| || ||| ||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  26683799 aaagataaaaattcaagggcggca-ttcatttgcaagttgtcgtgcatggtttgctcttgtaccataaagcatttttc 26683875  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 4745392 - 4745325
Alignment:
Q  147 ctttaaaattgttctaaacttcatttactactcacttatctctctgcccatcacagaaattgtgcaat 214  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||| |||| | ||||||||||||    
T  4745392 ctttaaagttgttccaaacttcacttactacccactcatctctctgccaatcatataaattgtgcaat 4745325  T

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