View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_low_11 (Length: 250)
Name: NF16496_low_11
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 7943832 - 7944002
Alignment:
| Q |
15 |
aggggctgaagatggagtttggctggagggaggatttggatatgtttggattttagatgtaaccatcaccattccattaaactggggtaaggtaaggtaa |
114 |
Q |
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| T |
7943832 |
aggggctgaagatggagtttggctggagggaggatttggatatgtttggattttagatgtaaccatcaccattccattaaactgg----------ggtaa |
7943921 |
T |
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| Q |
115 |
ggtaaggtatgctatactatattctagatatctttcttataagattttattaaaaataattgtatctattttttatactat |
195 |
Q |
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| T |
7943922 |
ggtaaggtatgctatactatattccagatatctttgttataagattttattaaaaataattgtatctattttttatactat |
7944002 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 7945332 - 7945384
Alignment:
| Q |
198 |
tccacgttggcattgatatctcttcaattttactttgacgtcttgattctatc |
250 |
Q |
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| T |
7945332 |
tccacgttggcattgatatctcttcaatattactttgacgtcttgattctatc |
7945384 |
T |
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