View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16496_low_3 (Length: 454)
Name: NF16496_low_3
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 27296409 - 27295989
Alignment:
| Q |
19 |
ataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtccta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296409 |
ataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtccta |
27296310 |
T |
|
| Q |
119 |
acactgatggaattcacttacagaactcaagagatgtattgatatacaaaagtactatggcttgcggtaatatttcaattacggataaattattggacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27296309 |
acactgatggaattcacttacagaactcaagagatgtattgatatacaaaagtactatggcttgcggtaatatttcaattacggataaattattgcacat |
27296210 |
T |
|
| Q |
219 |
ttcgatttatcgaaacaacagttggtaactagtccatgcagaactccatgttttgaacttttcttaactgttatgcaggagatgattgtatttccataca |
318 |
Q |
| |
|
||| ||||||| |||||||||||||| | ||| ||| | ||||||||||| || ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
27296209 |
ttctatttatccaaacaacagttggt-attaggcca-------------ggtttgaactttt-tttactattatgcaggagatgattgtatttctataca |
27296125 |
T |
|
| Q |
319 |
aactggatgctcaaacgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtc |
418 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296124 |
aactggatgctcaaatgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtc |
27296025 |
T |
|
| Q |
419 |
tcaaacatcactgtcagggatgtcaacatgcataac |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296024 |
tcaaacatcactgtcagggatgtcaacatgcataac |
27295989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 290 - 447
Target Start/End: Original strand, 14738520 - 14738677
Alignment:
| Q |
290 |
tatgcaggagatgattgtatttccatacaaactggatgctcaaacgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtc |
389 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||| ||||||| || || |||||||||||||| ||| || |
|
|
| T |
14738520 |
tatgcaggagatgattgcatttctatacaaactggatgctcaaatgtatatgtacacaatgtcaactgtggtccgggacatggaatcagcattggaagtt |
14738619 |
T |
|
| Q |
390 |
taggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacat |
447 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
14738620 |
taggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacat |
14738677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 14737654 - 14737796
Alignment:
| Q |
19 |
ataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtccta |
118 |
Q |
| |
|
||||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | || |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
14737654 |
ataacaattcagaatagtcctcagtgtcatctaaagtttgacaattgcaatggggtccttgttcatgatgtgagtatttcatctcctggtgatagcccta |
14737753 |
T |
|
| Q |
119 |
acactgatggaattcacttacagaactcaagagatgtattgat |
161 |
Q |
| |
|
| || |||||||||||| | ||||| || | |||||| ||||| |
|
|
| T |
14737754 |
ataccgatggaattcaccttcagaattccaaagatgtgttgat |
14737796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 865581 - 865624
Alignment:
| Q |
97 |
tcatctcctggtgatagtcctaacactgatggaattcacttaca |
140 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
865581 |
tcatcacctggtgatagtcctaacacagatggaattcacctaca |
865624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University