View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16496_low_6 (Length: 312)
Name: NF16496_low_6
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 38022708 - 38022984
Alignment:
| Q |
20 |
agaagaatcactcaataggaccctatagcttaggacctatctaaattcaaaattgggtgtgttccagtttgagatcctattgagaggttacctttccaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38022708 |
agaagaatcactcaataggaccctatagcttaggacccatctaaattcaaaattgggtgtgttccagtttgagatcctatagagaggttacctttccaaa |
38022807 |
T |
|
| Q |
120 |
tgaatcagcaatatgtaccatccatgtgttaaacagcacttatgtacagttacactttaggtaaaagatttgaataacgaatcaacaaaaatagaagtgg |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38022808 |
tgaatcagcaatatgtgacatccatgtgttaaacagcagttatgtacagttacactttaggtaaaagatttgaataacgaatcaacaaaaatagaagtgg |
38022907 |
T |
|
| Q |
220 |
tgtggaatgattaaaggagatgcaataatggtaaacactataagacaaaacattgctttgaaattgaggttaattat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38022908 |
tgtggaatgattaaaggagatgcaataatggtaaacactataagacaaaacattgctttgaaattgaggttaattat |
38022984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University