View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_low_7 (Length: 293)
Name: NF16496_low_7
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 35104807 - 35105074
Alignment:
| Q |
12 |
attattctacttcctcgacaaagcaatttaggatttatacccaattcctgcaattgcgctagctgatctacatcgtcaagaactagaaggaacttaatgc |
111 |
Q |
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| T |
35104807 |
attattctactacctcgacaaagcaatttgggatttatagccaactcctgtaattgctctaagtgatcaatgttgtcaagaacaagaaggaccttaatgc |
35104906 |
T |
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| Q |
112 |
cactgtgaagcccatttatcataatccctgctatttcactagtatcatatgaatctagatttctttcatctagagcttgaccaagaatttgtttttgtag |
211 |
Q |
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| T |
35104907 |
cactttgaagcctatttatcataatcccagctatttcacaagtatcgtatgaatctaggtttctttcatctagagtttgaccaagaatttgtttttgtac |
35105006 |
T |
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| Q |
212 |
agcaacaatgccaccatccatataaattttgcgtgtgttatgaataaaacaacgagcatcaaactgat |
279 |
Q |
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| T |
35105007 |
agaaacaatgccaccatccatataaattttgcttgtgttatgaataaaacaacgagcatcaaactgat |
35105074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 35044967 - 35045235
Alignment:
| Q |
11 |
gattattctacttcctcgacaaagcaatttaggatttatacccaattcctgcaattgcgctagctgatctacatcgtcaagaactagaaggaacttaatg |
110 |
Q |
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| T |
35044967 |
gattattctactacctcaacaaagtaatttaggatttatagccaactcctgcaattgctctaattgattaatgttgtcaagaactactaggaccttaatg |
35045066 |
T |
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| Q |
111 |
ccactgtgaagcccatttatcataatccctgctatttcactagtatcatatgaatctagatttctttcatctagagcttgaccaagaatttgtttttgta |
210 |
Q |
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| T |
35045067 |
ccactgtgaagcctatttaccataattccagctatttcacatgcatcatgtgaatctagatttctttcatctagagcttgacgaagaatttgtttttgta |
35045166 |
T |
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| Q |
211 |
gagcaacaatgccaccatccatataaattttgcgtgtgttatgaataaaacaacgagcatcaaactgat |
279 |
Q |
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| T |
35045167 |
cggcagcaatgccaccatccatataaattttgcttgtgttatgaataaaacaacgagcatcaaactgat |
35045235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 499083 - 499174
Alignment:
| Q |
11 |
gattattctacttcctcgacaaagcaatttaggatttatacccaattcctgcaattgcgctagctgatctacatcgtcaagaactagaagga |
102 |
Q |
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| T |
499083 |
gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaagga |
499174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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