View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_low_9 (Length: 273)
Name: NF16496_low_9
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 37306936 - 37307098
Alignment:
| Q |
38 |
gagagtagatggtgcaaaagatgacggctaccaaactcgttaatttttactcttccctactgaatttacttatattcattcacgtactctacgataatgt |
137 |
Q |
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| T |
37306936 |
gagagtagatggtgcaaaagatgacggctaccaaactcgttaatttttactcttccctactgaatttacttatattcattcacgtactctacgataatgt |
37307035 |
T |
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| Q |
138 |
aaatatactctaattatactagta--ttatattggtatttgagg-aaaaaattacatatataa |
197 |
Q |
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| T |
37307036 |
aaatatactctacttatactagtagtatatattggtatttgaggaaaaaaattacatatataa |
37307098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 6599246 - 6599212
Alignment:
| Q |
221 |
aactaaaaagctaatcgaacattcttaggcatgca |
255 |
Q |
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| T |
6599246 |
aactaaaaagctaaacgaacattcttaggcatgca |
6599212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 7304989 - 7305023
Alignment:
| Q |
221 |
aactaaaaagctaatcgaacattcttaggcatgca |
255 |
Q |
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| T |
7304989 |
aactaagaagctaatcgaacattcttaggcatgca |
7305023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 37307163 - 37307200
Alignment:
| Q |
218 |
tagaactaaaaagctaatcgaacattcttaggcatgca |
255 |
Q |
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| T |
37307163 |
tagaactaaaaagctaatcgaagattcctaggcatgca |
37307200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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