View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16497_low_2 (Length: 321)

Name: NF16497_low_2
Description: NF16497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16497_low_2
NF16497_low_2
[»] chr1 (1 HSPs)
chr1 (10-306)||(51367453-51367749)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 51367453 - 51367749
Alignment:
Q  10 attattctggacttagttttagttttcattaacgttgattttctctgcatggagaggtttctctcaaacgaagcattcgaggaacacctcaaaacctcac 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367453 attaatctggacttagttttagttttcattaacgttgattttctctgcatggagaggtttctctcaaacgaagcattcgaggaacacctcaaaacctcac 51367552  T
Q  110 aatcaccaccaccatgacccgccggtgatggagaacgacgacggtcgtgattagggggttgtggaggccgggcatactcacccattgacggcgagtcttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51367553 aatcaccaccaccatgacccgccggtgatggagaacgacgacggtcgtgattagggggttgtggaggccgggcatactcacccattgaaggcgagtcttt 51367652  T
Q  210 gctgtgtcttctccgaacaggatcgttcaccacggcatcaataccattcgaattagaagctggttcctcgaaacttactttcaactcgcgttgaata 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367653 gctgtgtcttctccgaacaggatcgttcaccacggcatcaatcccattcgaattagaagctggttcctcgaaacttactttcaactcgcgttgaata 51367749  T

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