View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16497_low_3 (Length: 294)
Name: NF16497_low_3
Description: NF16497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16497_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 44172815 - 44172537
Alignment:
| Q |
1 |
gattggacactaattcagaacaagttaaccagttgaacatatatggaaccaaattacggtttagttcaagcatgtatcgtacgtcatttaattgagctaa |
100 |
Q |
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| T |
44172815 |
gattggacactaattcagaacaagttaaccagttgaacatatatggaaccaaattacggtttagttcaagcatgtat-gtacgtcatttaattgagctaa |
44172717 |
T |
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| Q |
101 |
gaaattaaaaagttatcgagttaaaactcaataattcaaattttggcaagagagaatgtattcacttttgacattaactagctttgattttgcatataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44172716 |
gaaattaaaaagttatcgagttaaaactcaataattcaaattttggcaagagagaatgtattcacttttgacattaactagctttgattttgcatataga |
44172617 |
T |
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| Q |
201 |
aactacatcggttgaaagannnnnnnnacagtgtattatatgaagaccaaatgtccaaatgtatcaagataaaataaaat |
280 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44172616 |
aactacatcggttgaaagattttttttacagtgtattatatgaagaccaaatgtccaaatgtgtcaagataaaataaaat |
44172537 |
T |
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