View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16497_low_5 (Length: 207)

Name: NF16497_low_5
Description: NF16497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16497_low_5
NF16497_low_5
[»] chr5 (3 HSPs)
chr5 (48-157)||(11334917-11335026)
chr5 (154-207)||(11335011-11335064)
chr5 (13-53)||(11320771-11320811)
[»] chr7 (3 HSPs)
chr7 (13-114)||(26403200-26403301)
chr7 (33-103)||(3889163-3889238)
chr7 (36-114)||(10236744-10236822)
[»] chr8 (1 HSPs)
chr8 (57-120)||(32041645-32041708)
[»] chr2 (2 HSPs)
chr2 (71-131)||(1173120-1173178)
chr2 (10-53)||(32290876-32290919)
[»] chr4 (1 HSPs)
chr4 (62-114)||(7259241-7259292)
[»] scaffold0007 (1 HSPs)
scaffold0007 (67-120)||(14629-14682)
[»] chr6 (1 HSPs)
chr6 (67-120)||(18984209-18984262)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 11334917 - 11335026
Alignment:
Q  48 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaacataaaaatcaataag 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11334917 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacaaccatacaaaagaaccaatagagaggagcaaccaaacagaaaaatcaataag 11335016  T
Q  148 gagaagtgca 157  Q
    ||||||||||    
T  11335017 gagaagtgca 11335026  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 11335064 - 11335011
Alignment:
Q  154 tgcacttctcccttatggattcttatgattgattgaattgcacttctccttatt 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11335064 tgcacttctcccttatggattcttttgattgattgaattgcacttctccttatt 11335011  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11320771 - 11320811
Alignment:
Q  13 catcaaccactcaaagagagaaccatctaaacataagaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11320771 catcaaccactcaaagagagaaccatctaaacataagaacc 11320811  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 26403301 - 26403200
Alignment:
Q  13 catcaaccactcaaagagagaaccatctaaacataagaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaacca 112  Q
    ||||||||| | ||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||  | | ||||||| |||||||||||||||| ||    
T  26403301 catcaaccagttaaatagagaaccatctaaacagaagaaccaagtcaaaccaaaccaaacaaaagaattggtggagagaagcagccatacaaaagaatca 26403202  T
Q  113 at 114  Q
    ||    
T  26403201 at 26403200  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 3889238 - 3889163
Alignment:
Q  33 aaccatctaaacataagaac-----ccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccataca 103  Q
    ||||||| ||||||||||||     |||| ||||||||||||||||||||||||| ||| ||||| || |||||||    
T  3889238 aaccatccaaacataagaactaagtccaaccaaaccaaaccaaacaaaagaaccggtagggagaagcaaccataca 3889163  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 10236822 - 10236744
Alignment:
Q  36 catctaaacataagaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 114  Q
    |||| ||||| ||||||| | |||||| || |||||||||||||||| ||| ||||| || ||||| | ||||||||||    
T  10236822 catccaaacaaaagaaccaagtcaaacaaatccaaacaaaagaaccgctagggagaagcaaccatatagaagaaccaat 10236744  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 32041708 - 32041645
Alignment:
Q  57 tcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 120  Q
    |||||| ||||||||||||||||||| ||||||||| || |||||||||||||| ||| |||||    
T  32041708 tcaaactaaaccaaacaaaagaaccggtagagagaatcaaccatacaaaagaacaaatagagag 32041645  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 1173120 - 1173178
Alignment:
Q  71 acaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaa 131  Q
    |||||||||| | ||||||||| ||| |||||||||||||||||  |||||||||||||||    
T  1173120 acaaaagaacaggtagagagaagcagtcatacaaaagaaccaat--agaggagcaaccaaa 1173178  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 32290919 - 32290876
Alignment:
Q  10 catcatcaaccactcaaagagagaaccatctaaacataagaacc 53  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||    
T  32290919 catcatcaaccaatcaaagagagaaccatccaaacaaaagaacc 32290876  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 7259241 - 7259292
Alignment:
Q  62 ccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 114  Q
    |||||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  7259241 ccaaaccagacaaaagaaccgatag-gagaaacaaccatacataagaaccaat 7259292  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 14629 - 14682
Alignment:
Q  67 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 120  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  14629 ccaaacaaaagaaccggtagagataactagccatacataagaaccaatagagag 14682  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 18984262 - 18984209
Alignment:
Q  67 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 120  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  18984262 ccaaacaaaagaaccggtagagataactagccatacacaagaaccaatagagag 18984209  T

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