View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16498_high_1 (Length: 495)

Name: NF16498_high_1
Description: NF16498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16498_high_1
NF16498_high_1
[»] chr5 (3 HSPs)
chr5 (15-481)||(41886018-41886483)
chr5 (153-228)||(32268868-32268943)
chr5 (156-203)||(41900191-41900238)
[»] chr3 (1 HSPs)
chr3 (163-207)||(51120326-51120370)
[»] chr2 (1 HSPs)
chr2 (163-207)||(45244522-45244566)
[»] chr7 (1 HSPs)
chr7 (166-203)||(10616209-10616246)
[»] chr8 (1 HSPs)
chr8 (163-203)||(17642614-17642654)
[»] chr4 (3 HSPs)
chr4 (163-203)||(1488824-1488864)
chr4 (163-203)||(1537251-1537291)
chr4 (163-203)||(12120920-12120960)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Complemental strand, 41886483 - 41886018
Alignment:
Q  15 gatgaatctactgagtagacgaggaggaaaagggagggtttgactttgatcatagcagattgtgagagagaatctgatgcagttggtgatggacaagaat 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  41886483 gatgaatctactgagtagacgaggaggaaaagggagggtt-gactttgatcacagcagattgtgagagagaatctgatgcggttggtgatggacaagaat 41886385  T
Q  115 tgtttcgagacaactgacaaagatgtcatgcaactatggttgtctttcaggaatttgaagacacattctcaacactcatcaggtaaatagaaaccaccaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41886384 tgtttcgagacaactgacaaagatgtcatgcaactatggttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaa 41886285  T
Q  215 ccattgtttttcttttgcttcttcttgcttgagtggactccatagttggtttgaaagatcttcttttccttttcatagtggacttccagtcaaataatct 314  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886284 tcattgtttttcttttgcttcttcttgcttgagtggactccatagttggtttgaaagatcttcttttccttttcatagtggacttccagtcaaataatct 41886185  T
Q  315 tatgttaacttgtgaagctactttagaggttaagtactcaggtatttagaggagaaatcannnnnnnnaaggaatcattttagaaaagtcgccaccatca 414  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||    
T  41886184 tatgttaacttgtgaagctattttagaggttaagtactcaggtatttagaggagaaatcattttttttaaggaatcattttagaaaagttgccaccatca 41886085  T
Q  415 tcatcagcatcccaattctcaaggaagcagtaacatcatcttttaacagatagaagcggtttggtgg 481  Q
    ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  41886084 tcagcagcatcccaattcccaaggaagtagtaacatcatcttttaacagatagaagcagtttggtgg 41886018  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 32268868 - 32268943
Alignment:
Q  153 gttgtctttcaggaatttgaagacacattctcaacactcatcaggtaaatagaaaccaccaaccattgtttttctt 228  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||  |||||  || ||||| |||||||    
T  32268868 gttgtctttcaagaatttgaagacacattcccaacactcatctggtaaatatgaaccagaaatcattgattttctt 32268943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 41900238 - 41900191
Alignment:
Q  156 gtctttcaggaatttgaagacacattctcaacactcatcaggtaaata 203  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  41900238 gtctttgaggaatttgaagacacattcccaacactcatctggtaaata 41900191  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 51120370 - 51120326
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 207  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  51120370 aggaatttgaagacacattcccaacagtcatcaggtaaatagaaa 51120326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 45244566 - 45244522
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 207  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  45244566 aggaatttcaagacacattcccaacactcatcaggtaaatagaaa 45244522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  166 aatttgaagacacattctcaacactcatcaggtaaata 203  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 17642654 - 17642614
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaata 203  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  17642654 aggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 1488864 - 1488824
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaata 203  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  1488864 aggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 1537291 - 1537251
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaata 203  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  1537291 aggaatctgaatacacattcccaacactcatcaggtaaata 1537251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 12120960 - 12120920
Alignment:
Q  163 aggaatttgaagacacattctcaacactcatcaggtaaata 203  Q
    |||||| ||| ||||||||| ||||||||||||||||||||    
T  12120960 aggaatctgatgacacattcccaacactcatcaggtaaata 12120920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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