View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16499_high_10 (Length: 309)

Name: NF16499_high_10
Description: NF16499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16499_high_10
NF16499_high_10
[»] chr4 (11 HSPs)
chr4 (5-309)||(2391280-2391584)
chr4 (164-309)||(2382915-2383062)
chr4 (163-309)||(2380558-2380706)
chr4 (5-130)||(2381652-2381777)
chr4 (56-129)||(2380439-2380512)
chr4 (205-309)||(2381814-2381920)
chr4 (58-113)||(2533992-2534047)
chr4 (58-113)||(2547223-2547278)
chr4 (74-115)||(12124522-12124563)
chr4 (65-129)||(2382813-2382877)
chr4 (73-113)||(2625588-2625628)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 2391280 - 2391584
Alignment:
Q  5 tgtccaagaatatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttact 104  Q
    ||||||| || |||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391280 tgtccaaaaagatgaaaaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttact 2391379  T
Q  105 tgaagaacttgttctcaaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttccc 204  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2391380 cgaagaacttgttctcaaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttccc 2391479  T
Q  205 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataaccta 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391480 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataaccta 2391579  T
Q  305 gatgg 309  Q
    |||||    
T  2391580 gatgg 2391584  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 2382915 - 2383062
Alignment:
Q  164 attttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatct 263  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||| ||||| |||||||    
T  2382915 attttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccatcgatagccaaattattaattatct 2383014  T
Q  264 ccacagcaaccctcgaccttt--cagaggagaagaataacctagatgg 309  Q
     | ||  |||| | |||||||  ||||||||||||||||| |||||||    
T  2383015 tcgcaaaaaccgtggacctttcacagaggagaagaataacttagatgg 2383062  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 2380558 - 2380706
Alignment:
Q  163 gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc 262  Q
    ||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| |   ||||||||||||| ||||| ||||||    
T  2380558 gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc 2380657  T
Q  263 tccacagcaaccctcgacctttca--gaggagaagaataacctagatgg 309  Q
    ||| ||  |||| | |||||||||  ||||||||||||||| |||||||    
T  2380658 tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatgg 2380706  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 2381652 - 2381777
Alignment:
Q  5 tgtccaagaatatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttact 104  Q
    ||||||| || ||||||||||||||||||||||||||||  |||       ||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  2381652 tgtccaaaaagatgaaaaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttact 2381751  T
Q  105 tgaagaacttgttctcaaggaaacag 130  Q
     |||||||| ||||||||| ||||||    
T  2381752 cgaagaactcgttctcaagaaaacag 2381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 2380439 - 2380512
Alignment:
Q  56 ggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca 129  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  2380439 ggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaaggaaaca 2380512  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 2381814 - 2381920
Alignment:
Q  205 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc 302  Q
    |||||||||||||||||||||  ||||  | |||| ||| ||||||||||| ||||||||| || ||||| | |||||||  ||||| |||||||||||     
T  2381814 aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact 2381913  T
Q  303 tagatgg 309  Q
    |||||||    
T  2381914 tagatgg 2381920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 2534047 - 2533992
Alignment:
Q  58 atcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact 113  Q
    ||||||||||| ||| ||||||| |||| |||||| ||||||||||||||||||||    
T  2534047 atcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaact 2533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 2547278 - 2547223
Alignment:
Q  58 atcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact 113  Q
    |||| |||||| ||| | |||||||||| |||||| ||||||||||||||||||||    
T  2547278 atcagcaagaatgatttattcttcattgctgattgtttccctttacttgaagaact 2547223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
Q  74 tcttcttcattgttgattgcttccctttacttgaagaacttg 115  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttg 12124522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 2382813 - 2382877
Alignment:
Q  65 agaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca 129  Q
    ||||||||||||  |||||||   |||||||||||||||| || | ||| |||||||||||||||    
T  2382813 agaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaaca 2382877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 2625588 - 2625628
Alignment:
Q  73 atcttcttcattgttgattgcttccctttacttgaagaact 113  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625588 atcttctttattgttgattgtttccctttactcgaagaact 2625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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