View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16499_high_3 (Length: 357)
Name: NF16499_high_3
Description: NF16499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16499_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 25011328 - 25010972
Alignment:
| Q |
1 |
caaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggacaattgtaaaatgatc |
100 |
Q |
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| T |
25011328 |
caaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaacaattgtaaaatgatc |
25011229 |
T |
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| Q |
101 |
attagtgctaacctttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaag |
200 |
Q |
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| T |
25011228 |
attagtgctaacctttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaag |
25011129 |
T |
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| Q |
201 |
tttacgctgttaccatttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttcatttgaatttggctcctttgtaggcgttg |
300 |
Q |
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| T |
25011128 |
tttacgctgttaccatttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttcatttgaatttggctcctttgtaggcgttg |
25011029 |
T |
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| Q |
301 |
gaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggcgttatg |
357 |
Q |
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| T |
25011028 |
gaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggtgttatg |
25010972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
| Q |
64 |
gagttcaaatcctatatgggacaattgtaaaatgatcatt |
103 |
Q |
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| T |
4752841 |
gagttcaaatcctatatggaacagttgtaaaatgatcatt |
4752802 |
T |
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