View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_high_12 (Length: 249)
Name: NF1649_high_12
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 17401342 - 17401582
Alignment:
| Q |
9 |
gagatgaaccccatcttagtgaggatagcttctaaataagaccaactaacactgtcaaaagatttagagatgccgagctttagagaaatatcacttattt |
108 |
Q |
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| T |
17401342 |
gagaagaaccccatcttagtgaggatagcttctaaataagaccaactaacactgtcaaaagatttagagatgccgagctttagagaaatatcacttattt |
17401441 |
T |
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| Q |
109 |
tccccttgtgcgtgaaacacatatgatggagaattttgaaagtcgttaaagcattatcggtgatggaccgagaatggacaaacgctgcctgcttcggaga |
208 |
Q |
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| T |
17401442 |
tccccttgtgcgtgcaacacatatgatggagaattttgaaagtcgttaaagcattatcggtgatggaccgagaatggacaaacgctgcctgcttcggaga |
17401541 |
T |
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| Q |
209 |
tatccacttattcataagaggacgaaggcggttggcaaggt |
249 |
Q |
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| T |
17401542 |
tatccacttattcataagaggacgaaggcggttggcaaggt |
17401582 |
T |
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