View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_high_14 (Length: 236)
Name: NF1649_high_14
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 30421435 - 30421570
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaataggcactacaaaacagaccgcagcgcactaccaaagacaaacttgatnnnnnnn |
117 |
Q |
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| T |
30421435 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaataggcactacaaaacagaccgcagcgcactaccaaagacaaacttgat-aaaaaa |
30421533 |
T |
|
| Q |
118 |
nnncccctaagagcccaattccaaccaaaggaggact |
154 |
Q |
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| T |
30421534 |
aaacccctaagagcccaattccaaccaaaggaggact |
30421570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 8879414 - 8879371
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa |
61 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8879414 |
agcacaaggtgcacttaaccggcaaaggaggaaaaagagtacaa |
8879371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5738513 - 5738471
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa |
61 |
Q |
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| T |
5738513 |
agcacaagatgcacttaacccgc-aaggaggaaaaagagtacaa |
5738471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 5885935 - 5885854
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaataggcactacaaaacagaccgcagcgcactaccaaag |
99 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| |
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| T |
5885935 |
agcataagatgcacttaaccggctatggaggaaaaagagtacaaataggcaccacaaaacagaaggcagcacactaacaaag |
5885854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 6496020 - 6495977
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa |
61 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||||||||||| |
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|
| T |
6496020 |
agcacaagatgcacttaactggcaaaggagaaaaaagagtacaa |
6495977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 30367147 - 30367101
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaata |
64 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||||||| |
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|
| T |
30367147 |
agcacaagatgcactatacccgcgaaggagaaaaaagagtacaaata |
30367101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 50191767 - 50191811
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaa |
62 |
Q |
| |
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||||||||||||||| ||| || ||||||||||||||||||||| |
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|
| T |
50191767 |
agcacaagatgcactatacccgcaaaggaggaaaaagagtacaaa |
50191811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 27713518 - 27713559
Alignment:
| Q |
18 |
agcacaagatgcacttaaccggcgaaggaggaaaaagagtac |
59 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| |
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| T |
27713518 |
agcacaaggagcactaaaccggcgaaggaggaaaaagagtac |
27713559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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