View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1649_high_4 (Length: 389)
Name: NF1649_high_4
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 49914936 - 49914576
Alignment:
| Q |
18 |
acattcatagggggttgcagatattgtgtcggcataattgattgctggggtaaacccgcatatgattgattcacaacatgaggtctaagatgaaaattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49914936 |
acattcatagggggttgcagatattgtgtcggcataattgattgctggggtaaacccgcatatgattgattcacaacatgaggtctaagatgaaaattat |
49914837 |
T |
|
| Q |
118 |
tcattgtttgttgaggaggaaactgattctggttgttgatttgaggttgccattctggtatatcatcatcgtcatcattccagggttgaattgacccccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49914836 |
tcattgtttgttgaggaggaaactgattctggttgttgatttgaggttgccattctggtatatcatcatcgtcatcattccagggttgaattgacccccc |
49914737 |
T |
|
| Q |
218 |
aaatttgtcctgccagtttaccgaggttacagttgttttgttttgcccatatttgtgtacaagttctctcatttgttgtgcaggacgtgatggggtttgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49914736 |
aaatttgtcctgccagtttaccgaggttacagttgttttgttttgcccatatttgtgtacaagttctctcatttgttgtgcaggacgtgatggggtttgg |
49914637 |
T |
|
| Q |
318 |
acaaccgagtgagatgtgaccatacttggtcccatatgtttttgaaccaagtgtgatgatg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49914636 |
acaaccgagtgagatgtgaccatacttggtcccatatgtttttgaaccaagtgtgatgatg |
49914576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University