View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649_low_1 (Length: 553)

Name: NF1649_low_1
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1649_low_1
NF1649_low_1
[»] chr2 (2 HSPs)
chr2 (19-543)||(42691838-42692362)
chr2 (135-521)||(42689508-42689894)
[»] chr8 (19 HSPs)
chr8 (289-518)||(6262182-6262411)
chr8 (338-526)||(6273440-6273628)
chr8 (294-525)||(6362070-6362301)
chr8 (145-400)||(6455952-6456207)
chr8 (163-251)||(6261964-6262052)
chr8 (289-525)||(6351180-6351416)
chr8 (146-398)||(6449486-6449738)
chr8 (289-400)||(6389822-6389933)
chr8 (283-398)||(6423091-6423206)
chr8 (289-400)||(7457921-7458032)
chr8 (289-400)||(7470323-7470434)
chr8 (355-400)||(6368906-6368951)
chr8 (469-525)||(6287822-6287878)
chr8 (289-400)||(6409071-6409182)
chr8 (358-524)||(6320339-6320505)
chr8 (358-524)||(6330801-6330967)
chr8 (338-400)||(6287691-6287753)
chr8 (469-523)||(7458101-7458155)
chr8 (469-523)||(7470503-7470557)
[»] chr5 (1 HSPs)
chr5 (145-400)||(9606276-9606531)
[»] chr1 (2 HSPs)
chr1 (351-479)||(36926276-36926404)
chr1 (91-191)||(36926564-36926664)
[»] chr7 (1 HSPs)
chr7 (435-479)||(46709271-46709315)


Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 42691838 - 42692362
Alignment:
Q  19 agacggtgtcttagcttctcatcattgtttctctgagcaagattcttctcaatttctgccaacttgtttccgaacttcttaaaggcctctaatgcccttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691838 agacggtgtcttagcttctcatcattgtttctctgagcaagattcttctcaatttctgccaacttgtttccgaacttcttaaaggcctctaatgcccttg 42691937  T
Q  119 tatctgatgtccagtttggattgtctctctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691938 tatctgatgtccagtttggattgtctctctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctg 42692037  T
Q  219 aaacttcggtgtaattgtcttcaagtatgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgaga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692038 aaacttcggtgtaattgtcttcaagtatgccttttgtggacttttgactagctcgttgtattccgctgaccctttctcaggcatgaatctcctactgaga 42692137  T
Q  319 gttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcga 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42692138 gttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaagcaatccatatgacagtagtgcaaacttcga 42692237  T
Q  419 ctagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcaga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692238 ctagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcaga 42692337  T
Q  519 atcttgtctaagtatgtcatctgtg 543  Q
    |||||||||||||||||||||||||    
T  42692338 atcttgtctaagtatgtcatctgtg 42692362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 135 - 521
Target Start/End: Complemental strand, 42689894 - 42689508
Alignment:
Q  135 tggattgtctctctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaatt 234  Q
    |||||| ||||| | ||||||||| |||||||||||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||    
T  42689894 tggattttctctttgtccaaggtaaacttcatcagaagcatgtcttgacaatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgatt 42689795  T
Q  235 gtcttcaagtatgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacggtttaata 334  Q
    ||  ||||||| |||||||| ||||| || || |  || |  ||||  || |  |||| |||||| |  ||||| ||||||| |||||| |||||||  |    
T  42689794 gttctcaagtaagccttttgaggactcttcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaa 42689695  T
Q  335 ttaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagc 434  Q
    | ||||| ||||| | ||| ||||||||||||||||||||||| || ||||||||  |||||||||   |||||||| |||| || ||||||||| | |     
T  42689694 taaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggctgaagccgtccatatgatgatagtgcaagcttcaacaagctcttcaagtgt 42689595  T
Q  435 ttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatc 521  Q
    ||||| ||| ||||||||||||| || ||||  |||||| |||||   |||||| | |||||||||||||  ||| || ||||||||    
T  42689594 ttgcaacttgggccaccatggcttgtctttcaaatcaccatgacctttctctacaacttctttccaccaatgttgaagctcagaatc 42689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 289 - 518
Target Start/End: Original strand, 6262182 - 6262411
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||| || | ||| |||||||||||||||||||| |||||||||||||    
T  6262182 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 6262281  T
Q  389 caatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctac 488  Q
    || ||||||||| | || |||||||||  |  | |||||| |||| |||||| || |||||||||||||||| |||||| ||||| ||||| || |||||    
T  6262282 cagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 6262381  T
Q  489 gagttctttccaccaagcttggagttcaga 518  Q
     | |||||||||||||| ||||||||||||    
T  6262382 aacttctttccaccaagattggagttcaga 6262411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 526
Target Start/End: Original strand, 6273440 - 6273628
Alignment:
Q  338 aacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttg 437  Q
    |||| ||||| | ||| |||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||   || |  | ||||   |||| |||    
T  6273440 aaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttg 6273539  T
Q  438 catcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttgtc 526  Q
    |||||||  |||||||    | ||||||   |||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||    
T  6273540 catcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtc 6273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 525
Target Start/End: Original strand, 6362070 - 6362301
Alignment:
Q  294 ctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatc 393  Q
    ||||||||||||||| |||||   |||||| ||||| |  ||  | ||||| || | ||| |||||||||||||| ||||| ||||| ||||||||||||    
T  6362070 ctcaggcatgaatcttctacttttagttggtcggttaacgatatatcctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatc 6362169  T
Q  394 catatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagtt 493  Q
    |||||||  || |||||| |||| |  | ||| ||||||| ||||||||||  ||||||||   | || |||   ||||| ||||| |||||||| ||||    
T  6362170 catatgagggtggtgcaagcttcaatcaactcctcacgagtttgcatcttaaaccaccatgtagcattcttcaagtcaccatgaccgacctctacaagtt 6362269  T
Q  494 ctttccaccaagcttggagttcagaatcttgt 525  Q
    |||||||  | |||||||||||||||||||||    
T  6362270 ctttccagaatgcttggagttcagaatcttgt 6362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 145 - 400
Target Start/End: Original strand, 6455952 - 6456207
Alignment:
Q  145 ctctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaattgtcttcaagt 244  Q
    |||||||| || ||||| ||||||||||| || ||||||||||| || || || ||||| || || || ||||||||||| |||||||| ||  |||| |    
T  6455952 ctctctccgagatacacctcatcagaagcatgtcttgacaatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaat 6456051  T
Q  245 atgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctcc 344  Q
    | |||||||| |||||||| || | ||| |  || ||||  |  |||| ||| || || ||||| ||||| |||||||||||||| |  ||  | |||||    
T  6456052 acgccttttgaggacttttcaccatctcatcatactccggagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctcc 6456151  T
Q  345 gtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 400  Q
     || | |||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  6456152 ataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 6456207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 6261964 - 6262052
Alignment:
Q  163 tcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaattgtcttcaagtatgcctt 251  Q
    ||||||||||| ||||| |||||||||||||| || ||||| || || ||||| ||||||||||||||||||||  ||||||| |||||    
T  6261964 tcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggcctt 6262052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 525
Target Start/End: Original strand, 6351180 - 6351416
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| ||||| |||||||||||||| ||||| |||||||    
T  6351180 cctttctcaggcatgaatcttctactctttgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagctgcatgaagtgctgaag 6351279  T
Q  389 caatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctac 488  Q
    |||||||||| |   | ||| || ||||||  | ||||||||| | ||||||||||  ||||||||   | || |||   ||||| ||||||||||||||    
T  6351280 caatccatataaggatggtggaagcttcgatcaactcttcacgggtttgcatcttaaaccaccatgtggcattcttcaggtcaccatgaccaacctctac 6351379  T
Q  489 gagttctttccaccaagcttggagttcagaatcttgt 525  Q
     ||||| |||||  | ||||||||||||| |||||||    
T  6351380 aagttccttccagaatgcttggagttcagcatcttgt 6351416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 398
Target Start/End: Original strand, 6449486 - 6449738
Alignment:
Q  146 tctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaattgtcttcaagta 245  Q
    |||||||||| ||||||||||| || || || ||||||||||| || || || ||||| || | ||| || ||| |||| |||||||| ||  |||| ||    
T  6449486 tctctccaagatacacttcatcggacgcatgtcttgacaatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatagttctcaaata 6449585  T
Q  246 tgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccg 345  Q
     |||||||| |||||||| || | ||| | ||||||||  |  |||  ||| || || ||||| ||||| |  ||||||||||| |  ||  | ||||||    
T  6449586 cgccttttgaggacttttcaccatctcatcgtattccggagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccg 6449685  T
Q  346 taggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatat 398  Q
    || | ||| ||||| |||||||||||||| |||||||| |||||| |||||||    
T  6449686 taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatat 6449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 6389822 - 6389933
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||||||||| || ||   |||||| ||||| |  ||  | || ||||| | ||| |||||||||||||||||||| ||||| |||||||    
T  6389822 cctttctcaggcatgaatcttctgcttttagttggtcggttaacaatgtatccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaag 6389921  T
Q  389 caatccatatga 400  Q
    ||||||||||||    
T  6389922 caatccatatga 6389933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 6423091 - 6423206
Alignment:
Q  283 gctgaccctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagag 382  Q
    ||||| ||||||||||||||||||||||| ||   |||||| ||||| |  ||  | ||||| || |  || |||||||||||||||||||| ||||| |    
T  6423091 gctgatcctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtg 6423190  T
Q  383 ctgaagcaatccatat 398  Q
    ||||||||||||||||    
T  6423191 ctgaagcaatccatat 6423206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 7457921 - 7458032
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| |||||||||||||||||||| ||||| |||||||    
T  7457921 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7458020  T
Q  389 caatccatatga 400  Q
    ||||||||||||    
T  7458021 caatccatatga 7458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 7470323 - 7470434
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| |||||||||||||||||||| ||||| |||||||    
T  7470323 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7470422  T
Q  389 caatccatatga 400  Q
    ||||||||||||    
T  7470423 caatccatatga 7470434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 6368906 - 6368951
Alignment:
Q  355 tgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 400  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  6368906 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 6287822 - 6287878
Alignment:
Q  469 tcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttgt 525  Q
    ||||||||||| |||||||| |||||||||||  | |||||||||||||||||||||    
T  6287822 tcaccgtgacctacctctacaagttctttccagaatgcttggagttcagaatcttgt 6287878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 6409071 - 6409182
Alignment:
Q  289 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 388  Q
    |||||||||||||||||||| |||||   |||||| ||||| |  ||  | || ||||| | ||| |||||||||||||||||||| ||||| |||||||    
T  6409071 cctttctcaggcatgaatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattgtccaaaattaacagctgcatgaagtgctgaag 6409170  T
Q  389 caatccatatga 400  Q
    | ||||| ||||    
T  6409171 ccatccaaatga 6409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 524
Target Start/End: Original strand, 6320339 - 6320505
Alignment:
Q  358 ccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggct 457  Q
    ||||||||||||||||| ||| | |||||||||||||||||||   |||||||| |||| |  | ||||  || || ||||||||||  ||||||||       
T  6320339 ccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactctgtacaagtttgcatcttaaaccaccatgtag 6320438  T
Q  458 cgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttg 524  Q
    | || |||  |||||| ||||| |||||||| | |||| ||||  | ||||| ||||||||||||||    
T  6320439 cattcttcaaatcaccatgacccacctctacaacttctctccaaaatgcttgcagttcagaatcttg 6320505  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 524
Target Start/End: Original strand, 6330801 - 6330967
Alignment:
Q  358 ccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggct 457  Q
    ||||||||||||||||| ||| | |||||||||||||||||||   |||||||| |||| |  | ||||  || || ||||||||||  ||||||||       
T  6330801 ccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactctgtacaagtttgcatcttaaaccaccatgtag 6330900  T
Q  458 cgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttg 524  Q
    | || |||  |||||| ||||| |||||||| | |||| ||||  | ||||| ||||||||||||||    
T  6330901 cattcttcaaatcaccatgacccacctctacaacttctctccaaaatgcttgcagttcagaatcttg 6330967  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 6287691 - 6287753
Alignment:
Q  338 aacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 400  Q
    |||| ||||| | ||| ||||||||||||||||| || ||||| || ||||||||||||||||    
T  6287691 aaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatatga 6287753  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 523
Target Start/End: Original strand, 7458101 - 7458155
Alignment:
Q  469 tcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatctt 523  Q
    ||||| ||||| |||||||| |||||||||||  | |||||||||||||||||||    
T  7458101 tcaccatgacccacctctacaagttctttccaaaatgcttggagttcagaatctt 7458155  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 523
Target Start/End: Original strand, 7470503 - 7470557
Alignment:
Q  469 tcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatctt 523  Q
    ||||| ||||| |||||||| |||||||||||  | |||||||||||||||||||    
T  7470503 tcaccatgacccacctctacaagttctttccaaaatgcttggagttcagaatctt 7470557  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 400
Target Start/End: Complemental strand, 9606531 - 9606276
Alignment:
Q  145 ctctctccaaggtacacttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaattgtcttcaagt 244  Q
    |||||||||||||| | |||||||||||| || || |||||||| || || || ||||| || || || || ||| | || |||||||||||  |||| |    
T  9606531 ctctctccaaggtagatttcatcagaagcatgtctagacaatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaat 9606432  T
Q  245 atgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctcc 344  Q
    |||||||||| ||  |||| || | ||| |  || | ||  |  |||||||| || ||  |||| | ||| || |||||||||||||  ||  |||||||    
T  9606431 atgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctcc 9606332  T
Q  345 gtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 400  Q
     || | ||| |||||||||||||||||||| |||||||| |||||| |||||||||    
T  9606331 ataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 9606276  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 36926404 - 36926276
Alignment:
Q  351 atactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccac 450  Q
    |||||||||||| || || || || || |||||||||||||||||||| | | ||||||||  ||| |  ||||||||  |||  |||||||| ||||||    
T  36926404 atactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgcatctttggccac 36926305  T
Q  451 catggctcgtttttcttatcaccgtgacc 479  Q
    || ||||| | |||||| ||||| |||||    
T  36926304 caaggctcatctttcttgtcaccatgacc 36926276  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 36926664 - 36926564
Alignment:
Q  91 aacttcttaaaggcctctaatgcccttgtatctgatgtccagtttggattgtctctctctccaaggtacacttcatcagaagcgtgccttgacaatattt 190  Q
    ||||||| ||| ||||| |||||| || | || || ||||| | |||| ||||||||| ||||||||| || ||||||  ||| ||||| ||||||||||    
T  36926664 aacttctcaaaagcctccaatgcctttatgtcagaagtccaatctggagtgtctctctgtccaaggtagacctcatcactagcatgcctagacaatattt 36926565  T
Q  191 c 191  Q
    |    
T  36926564 c 36926564  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 46709271 - 46709315
Alignment:
Q  435 ttgcatcttaggccaccatggctcgtttttcttatcaccgtgacc 479  Q
    ||||||||| |||||||| |||||||||||||| || ||||||||    
T  46709271 ttgcatctttggccaccaaggctcgtttttcttgtcgccgtgacc 46709315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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