View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_low_11 (Length: 255)
Name: NF1649_low_11
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 49914363 - 49914599
Alignment:
| Q |
19 |
aacatagctctaaaaggcaaattttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagac |
118 |
Q |
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| T |
49914363 |
aacatagctctaaaaggcaaattttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagac |
49914462 |
T |
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| Q |
119 |
caccgtgagtgaacctccgagtggtgatgatgatgatgttcctcctggattcgggccaccggcccgggttgaggatgacctcccggagtataatttttcc |
218 |
Q |
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| T |
49914463 |
caccgtgagtgaacctccgagtggtgatgatgatgatgttcctcctggattcgggccaccagcccgggttgaggatgacctcccggagtataatttttcc |
49914562 |
T |
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| Q |
219 |
ggtagttcaaatccatcatcacacttggttcaaaaac |
255 |
Q |
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| T |
49914563 |
ggtagttcaaatccatcatcacacttggttcaaaaac |
49914599 |
T |
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