View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649_low_15 (Length: 238)

Name: NF1649_low_15

Description: NF1649

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1649_low_15

[»] chr6 (1 HSPs)

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 197; E-Value: 1e-107

Query Start/End: Original strand, 1 - 220

Target Start/End: Complemental strand, 16973184 - 16972964

Alignment:

Q	1	ttattggagtattaactataaagggagaactcacaaaatacaaaggcaatctccgatcaaccaattatgtgcctctaaagttagacgagtttggataaat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16973184	ttattggagtattaactacaaagggagaactcacaaaatacaaaggcaatctccgatcaaccaattatgtgcctctaaagttagacgagtttggataaat	16973085	T

Q	101	attattctcatgtttttgttctacattaatagatctttgtgattgataatttaatttatttgta-gggcgaagagaaactcaggtgcacattgcagggaa	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16973084	attattctcatgtttttgttctacattaatagatttttatgatttataatttaatttatttgtaggggcgaagagaaactcaggtgcacattgcagggaa	16972985	T

Q	200	aatatgtaattttgtacgtaa	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16972984	aatatgtaattttgtacgtaa	16972964	T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 63 - 131

Target Start/End: Original strand, 34739264 - 34739332

Alignment:

Q	63	aattatgtgcctctaaagttagacgagtttggataaatattattctcatgtttttgttctacattaata	131	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34739264	aattatatgcctctgaagttagacgacctcatataaatattattatcatgtttttgttctacattaata	34739332	T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 97 - 189

Target Start/End: Complemental strand, 33642619 - 33642527

Alignment:

Q	97	aaatattattctcatgtttttgttctacattaatagatctttgtgattgataatttaatttatttgtag-ggcgaagagaaactcaggtgcaca	189	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\| \| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33642619	aaatattatt-taatgtttttgtcccacattgataaacttatgtgatttataatttaatttatttgtagaggaggggagaaactcaggtgcaca	33642527	T

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