View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_low_16 (Length: 237)
Name: NF1649_low_16
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_16 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 2838011 - 2838119
Alignment:
| Q |
56 |
tggaactgcggttgggggttcacgatcacgtaccaatgcagaagctacaactacaagcttctagtcaaatgtgcattcagccaatttaaacgcggatgca |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2838011 |
tggaactgcggttgggggttcacgatcacgtaccaatgcagaagctacaactacaagcttctagtcaaatgtgcgttcagccaatttaaacgcggatgca |
2838110 |
T |
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| Q |
156 |
catacattt |
164 |
Q |
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| T |
2838111 |
cgtacattt |
2838119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 2375398 - 2375293
Alignment:
| Q |
56 |
tggaactgcggttgggggttcacgatcacgtaccaatgcagaagctacaactacaagcttctagtcaaatgtgcattcagccaatttaaacgcggatgca |
155 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |||||||| | | ||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2375398 |
tggaactgcagttgggggttcacgatcgcgtaccaatgcaaaagctacatcaaaaagcttctagtcaaacatgtgttcagccaatttaaacgcggatgca |
2375299 |
T |
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| Q |
156 |
cataca |
161 |
Q |
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|||||| |
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| T |
2375298 |
cataca |
2375293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 2380673 - 2380778
Alignment:
| Q |
56 |
tggaactgcggttgggggttcacgatcacgtaccaatgcagaagctacaactacaagcttctagtcaaatgtgcattcagccaatttaaacgcggatgca |
155 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |||||||| | | ||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2380673 |
tggaactgcagttgggggttcacgatcgcgtaccaatgcaaaagctacatcaaaaagcttctagtcaaacatgtgttcagccaatttaaacgcggatgca |
2380772 |
T |
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| Q |
156 |
cataca |
161 |
Q |
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|||||| |
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| T |
2380773 |
cataca |
2380778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 2837728 - 2837763
Alignment:
| Q |
15 |
agtaaccacacttcgcaacctcactgcattaccaaa |
50 |
Q |
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| T |
2837728 |
agtaaccacacttcgcaacctcaccgcattaccaaa |
2837763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 3777999 - 3777930
Alignment:
| Q |
168 |
ttttaccacaagggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccacagac |
237 |
Q |
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| T |
3777999 |
ttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagac |
3777930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3701098 - 3701162
Alignment:
| Q |
170 |
ttaccacaagggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccaca |
234 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||| ||||| |
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| T |
3701098 |
ttaccacatgggttcttagagagaaccaaagaacaagggttagttgttcctctttgggcaccaca |
3701162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3707865 - 3707929
Alignment:
| Q |
170 |
ttaccacaagggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccaca |
234 |
Q |
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| T |
3707865 |
ttaccacatgggttcttagatagaaccaaagaacaagggttagttgttcctctttgggcaccaca |
3707929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 3770330 - 3770266
Alignment:
| Q |
170 |
ttaccacaagggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccaca |
234 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||| |||| || ||||||| ||||| |
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| T |
3770330 |
ttaccacatgggttcttagaaagaaccaaagaacaagggttagttgttcctctttgggcaccaca |
3770266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3719374 - 3719438
Alignment:
| Q |
170 |
ttaccacaagggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccaca |
234 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||| |||| | ||||||| ||||| |
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| T |
3719374 |
ttaccacatgggttcttagagagaaccaaagaacaagggctagttgttccactttgggcaccaca |
3719438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 33005233 - 33005175
Alignment:
| Q |
179 |
gggttcttagagagaaccaaagaacaagggttagatgttactttttgggccccacagac |
237 |
Q |
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|||||||||| |||||||||||||||||| |||| ||| |||||||||| |||||||| |
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| T |
33005233 |
gggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagac |
33005175 |
T |
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