View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_low_18 (Length: 222)
Name: NF1649_low_18
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 16969206 - 16969082
Alignment:
| Q |
13 |
agatgaagaagggtcagtgcagcaatgtgatgaaaactttgttggtgatgaagacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaa |
112 |
Q |
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| T |
16969206 |
agatgaagaagggtcagtgcagcaatgtgatgaaaactttgttggtgatgaagacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaa |
16969107 |
T |
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| Q |
113 |
gaacactctaatggttctgattttgatg |
140 |
Q |
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| T |
16969106 |
gaacact---atggttctgattctgatg |
16969082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 17008580 - 17008518
Alignment:
| Q |
59 |
gatgaagacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacactct |
121 |
Q |
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| T |
17008580 |
gatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaagaacactct |
17008518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 10601061 - 10601113
Alignment:
| Q |
68 |
aaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacactc |
120 |
Q |
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| T |
10601061 |
aacccgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactc |
10601113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 35262481 - 35262515
Alignment:
| Q |
85 |
ttcagatgagtatggtgaaagtgatgaagaacact |
119 |
Q |
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| T |
35262481 |
ttcagatgagtatggtgaaagtgatgaagaacact |
35262515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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