View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_low_19 (Length: 221)
Name: NF1649_low_19
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43397079 - 43396859
Alignment:
| Q |
1 |
tatagccattctttatgattgcatcactccaaacaccaataatatgcatatcagatgatgcattactttgttgatcttctatttattttctggcttgatt |
100 |
Q |
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| T |
43397079 |
tatagtcattctttgtgattgcatcactccaaacaccaataatatgcatatcagatgatgcattactttgttgatcttctatttattttctggcttgatt |
43396980 |
T |
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| Q |
101 |
ctccgtcaaatttgtagcatgcagttgtacaggagtgtgtacaaaacttgttcctcggtgttacatagtaatgactttgaccgagacaaaattttaaccc |
200 |
Q |
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| T |
43396979 |
ctccgtcaaatttgtagcatgcaattgtacaggagtgtgtacaaaacttgttcctcagtgatacatagtaatgactttgaccgagacaaaattttaaccg |
43396880 |
T |
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| Q |
201 |
gacaaatgacaataagattac |
221 |
Q |
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| T |
43396879 |
gacaaatgacaatgagattac |
43396859 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 22575094 - 22575153
Alignment:
| Q |
71 |
ttgatcttctatttattttctggcttgattctccgtcaaatttgtagcatgcagttgtac |
130 |
Q |
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| T |
22575094 |
ttgatcctctacttatttactggcttgattctctgccaaatttgtagcataaagttgtac |
22575153 |
T |
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