View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1649_low_2 (Length: 403)
Name: NF1649_low_2
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 38458416 - 38458598
Alignment:
| Q |
1 |
taaaacatagtcccatcaaacaaacccaacaagctttagtcaaaaatcaaaattgatagctatatagtatacttaaaataaccaaacaagacagacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38458416 |
taaaacatagtcccatcaaacaaacccaacaagctttagtcaaaaatcaaaattgatagctatatagtatacttaaaataaccaaacaagacagacaaat |
38458515 |
T |
|
| Q |
101 |
aataagatgagtggcaacaatcattagactaaattaaaacatagattatttaagttatttaatcgtaataaattggttcttttaagtt |
188 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
38458516 |
aat---atgagtgacaacaatcattagactaaattaaaacatag-ttatttaatttatttaattgtaataaattggtt-ttttaagtt |
38458598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 38459560 - 38459683
Alignment:
| Q |
267 |
gttttagagtaacctaaaataattttttcaaataagtatgtgtgaaatcagaagtttttgtatgatcttacaatgaccaagattttcgaataaaaacttc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38459560 |
gttttagagtaacctaaaataattttttcaaataagtatgtgtgaaatcagaagtttttgtatgatcttacaatgaccaagattttcgaataaaaacttc |
38459659 |
T |
|
| Q |
367 |
tgacataagttgaaatcaacatct |
390 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38459660 |
tgacataagttgaaatcaacatct |
38459683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 38459501 - 38459541
Alignment:
| Q |
226 |
tatagcagtatagcggcgctgtagcagctatttaataacac |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38459501 |
tatagcagtatagcggcgctgtagcagctatttaataacac |
38459541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 45444991 - 45445021
Alignment:
| Q |
147 |
tatttaagttatttaatcgtaataaattggt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45444991 |
tatttaagttatttaatcgtaataaattggt |
45445021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 8198419 - 8198452
Alignment:
| Q |
149 |
tttaagttatttaatcgtaataaattggttcttt |
182 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
8198419 |
tttaagttatttaattgtaataaattggttcttt |
8198452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 8203179 - 8203212
Alignment:
| Q |
149 |
tttaagttatttaatcgtaataaattggttcttt |
182 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
8203179 |
tttaagttatttaattgtaataaattggttcttt |
8203212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University