View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649_low_20 (Length: 218)

Name: NF1649_low_20
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1649_low_20
NF1649_low_20
[»] chr2 (1 HSPs)
chr2 (1-210)||(13506242-13506451)
[»] chr7 (6 HSPs)
chr7 (13-98)||(2820323-2820408)
chr7 (6-87)||(23811435-23811516)
chr7 (6-95)||(29916554-29916643)
chr7 (111-163)||(17056088-17056140)
chr7 (130-166)||(4344396-4344432)
chr7 (130-166)||(20349541-20349577)
[»] chr8 (3 HSPs)
chr8 (8-94)||(4331639-4331725)
chr8 (6-87)||(18187593-18187674)
chr8 (91-163)||(12332387-12332459)
[»] chr5 (2 HSPs)
chr5 (30-95)||(26261924-26261989)
chr5 (30-96)||(26263034-26263100)
[»] chr4 (2 HSPs)
chr4 (130-178)||(2365584-2365632)
chr4 (117-163)||(38296271-38296317)
[»] chr3 (2 HSPs)
chr3 (111-163)||(44888463-44888515)
chr3 (117-166)||(6825387-6825436)
[»] chr1 (4 HSPs)
chr1 (130-188)||(20987733-20987791)
chr1 (111-163)||(21405396-21405448)
chr1 (111-163)||(22191311-22191363)
chr1 (147-203)||(34352956-34353012)
[»] chr6 (1 HSPs)
chr6 (51-123)||(2923363-2923435)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13506451 - 13506242
Alignment:
Q  1 ctccgattaccaaccttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcaccaagatg 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13506451 ctcccattaccaaccttcctcccaatactctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcaccaagatg 13506352  T
Q  101 aactactccgaccactaacctcccattcacctccccataacgagccaccaacaccctataccataatcctcatctatcctccaacatcatttccctaaca 200  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  13506351 aactactctgaccaccaacctcccattcatctccccataacgagccaccaacaccctataccataatcatcatctatcctccaacatcacttccctaaca 13506252  T
Q  201 aagtattatt 210  Q
    ||||||||||    
T  13506251 aagtattatt 13506242  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 2820408 - 2820323
Alignment:
Q  13 accttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcaccaaga 98  Q
    |||||||||  ||| |||||||| |||||||| || || ||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  2820408 accttcctctaaatactctcctcaaaccacccgccaccgtccccaccttccccatcacgaattttcgctacctccctccaccaaga 2820323  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 23811435 - 23811516
Alignment:
Q  6 attaccaaccttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcc 87  Q
    |||||||||| | |||  ||| ||||| || ||||||||||| ||||| |||||| | ||||||| ||||||||||||||||    
T  23811435 attaccaacccttctcaaaatactctcttcaaaccaccctcccccctcaacacctacaccatcacgaattttcgctacctcc 23811516  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 29916554 - 29916643
Alignment:
Q  6 attaccaaccttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcacca 95  Q
    |||||||| ||||||| |||| | ||||||  |||||| |||||| || |||||| | |||||||| ||| ||||||||||||| |||||    
T  29916554 attaccaatcttcctcacaatacactcctcataccaccttcctccgtcaacacctacaccatcacagattctcgctacctccctccacca 29916643  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 17056088 - 17056140
Alignment:
Q  111 accactaacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    ||||| |||||||||| | |||| |||||||| ||||||||||||||||||||    
T  17056088 accaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 17056140  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 4344396 - 4344432
Alignment:
Q  130 cctccccataacgagccaccaacaccctataccataa 166  Q
    |||| |||||||||||||| |||||||||||||||||    
T  4344396 cctcaccataacgagccactaacaccctataccataa 4344432  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 20349541 - 20349577
Alignment:
Q  130 cctccccataacgagccaccaacaccctataccataa 166  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  20349541 cctcaccataccgagccaccaacaccctataccataa 20349577  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4331639 - 4331725
Alignment:
Q  8 taccaaccttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcacc 94  Q
    ||||||||||||||||||| | |||||| ||||||||||| || || ||| |||||||||||   ||||||||||||||||| ||||    
T  4331639 taccaaccttcctcccaatacactcctcaaaccaccctccaccgtcaacatcttccccatcatggattttcgctacctccctccacc 4331725  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 18187593 - 18187674
Alignment:
Q  6 attaccaaccttcctcccaatgctctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcc 87  Q
    |||||||||| |||||  ||| || ||||| ||| |||||||||| || |||||| | ||||||||||||||||| ||||||    
T  18187593 attaccaaccctcctcttaatactatcctcaaactaccctcctccatctacacctacaccatcacaaattttcgcaacctcc 18187674  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 12332387 - 12332459
Alignment:
Q  91 caccaagatgaactactccgaccactaacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    |||||||| |||| |||||| || | |||||||||| | |||| ||||| |  ||||||||||||||||||||    
T  12332387 caccaagaagaaccactccggcccccaacctcccatcctcctcaccatatctcgccaccaacaccctatacca 12332459  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 26261989 - 26261924
Alignment:
Q  30 ctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcacca 95  Q
    |||||| ||||||||||||   || |||||| | |||||||||||||||||||||||||| |||||    
T  26261989 ctcctcaaaccaccctcctatatcaacacctacaccatcacaaattttcgctacctccctccacca 26261924  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 26263100 - 26263034
Alignment:
Q  30 ctcctcgaaccaccctcctccctccacaccttccccatcacaaattttcgctacctcccttcaccaa 96  Q
    |||||| ||||||||||||   || |||||  | |||||||||||||||||||||||||| ||||||    
T  26263100 ctcctcaaaccaccctcctatatcaacaccaacaccatcacaaattttcgctacctccctccaccaa 26263034  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 2365584 - 2365632
Alignment:
Q  130 cctccccataacgagccaccaacaccctataccataatcctcatctatc 178  Q
    |||| ||||||||||| |||||||||||||||||||| |||| ||||||    
T  2365584 cctcaccataacgagcaaccaacaccctataccataaacctcctctatc 2365632  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 38296271 - 38296317
Alignment:
Q  117 aacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    ||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  38296271 aacctcccattcacctcaccatatctcgccaccaacaccctatacca 38296317  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 44888463 - 44888515
Alignment:
Q  111 accactaacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    ||||| |||||||||| | |||| |||||||| ||||||||||||||||||||    
T  44888463 accaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 44888515  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 6825387 - 6825436
Alignment:
Q  117 aacctcccattcacctccccataacgagccaccaacaccctataccataa 166  Q
    |||||||||| | |||| ||||| || |||||||||||||||||||||||    
T  6825387 aacctcccatcctcctcaccataccgcgccaccaacaccctataccataa 6825436  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 20987733 - 20987791
Alignment:
Q  130 cctccccataacgagccaccaacaccctataccataatcctcatctatcctccaacatc 188  Q
    |||| ||||| ||||||||||||||||||| |||||| |||  ||||||| ||||||||    
T  20987733 cctcaccataccgagccaccaacaccctatgccataacccttctctatccaccaacatc 20987791  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 21405396 - 21405448
Alignment:
Q  111 accactaacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    ||||| |||||||||| | |||| |||||||| || |||||||||||||||||    
T  21405396 accaccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 21405448  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 22191363 - 22191311
Alignment:
Q  111 accactaacctcccattcacctccccataacgagccaccaacaccctatacca 163  Q
    ||||| |||||||||| | |||| |||||||  ||||||||||||||||||||    
T  22191363 accaccaacctcccatcctcctcaccataacacgccaccaacaccctatacca 22191311  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 34352956 - 34353012
Alignment:
Q  147 accaacaccctataccataatcctcatctatcctccaacatcatttccctaacaaag 203  Q
    ||||| |||||||||||||| || | ||||||| |||||| ||||| ||||||||||    
T  34352956 accaaaaccctataccataacccgcctctatccaccaacaccatttacctaacaaag 34353012  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 2923363 - 2923435
Alignment:
Q  51 ctccacaccttccccatcacaaattttcgctacctcccttcaccaagatgaactactccgaccactaacctcc 123  Q
    |||||||||||||||||||   |||||| |||||||||| |||||||| |||  |||||| || | |||||||    
T  2923363 ctccacaccttccccatcaaggattttcactacctccctccaccaagaagaaacactccgtcccccaacctcc 2923435  T

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