View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649_low_7 (Length: 327)
Name: NF1649_low_7
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 47460401 - 47460098
Alignment:
| Q |
18 |
actgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaacgtggtggtgccaagaaggaagagga |
117 |
Q |
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| T |
47460401 |
actgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaatgtggtggtgccaagaaggaagagga |
47460302 |
T |
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| Q |
118 |
tgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacagggacgttagggtca |
217 |
Q |
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| T |
47460301 |
tgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacaggaacgttagggtca |
47460202 |
T |
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| Q |
218 |
atttcatcgtcggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattgttgtttgtgcctatg |
317 |
Q |
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| T |
47460201 |
atttcatcgtcggagacaacagagaagtaaaagtcgtctacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattgttgtttgtgtctatg |
47460102 |
T |
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| Q |
318 |
cttc |
321 |
Q |
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| T |
47460101 |
cttc |
47460098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 47467001 - 47466724
Alignment:
| Q |
22 |
cataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaacgtggtggtgccaagaaggaagaggatgaa |
121 |
Q |
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| T |
47467001 |
cataagggtttcgttgaacagtaactcatcatcgacagtttttgatgaagacgctacgcacggaaaaaatggtggtggtgaagaggagaaagaggacgag |
47466902 |
T |
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| Q |
122 |
gggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacagggacgttagggtcaattt |
221 |
Q |
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| T |
47466901 |
tggttttggtgagaagtgatggcagaggccattaaggtttcttggaactgtaatgcttcagcgtacttgtcatcggagacaaaaac---agggtcagttt |
47466805 |
T |
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| Q |
222 |
catcgtcggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattg |
302 |
Q |
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| T |
47466804 |
cttgatcaaagacaatagagaagtaaaggtcgtctacagtgtcaaggccaatgaatgaggaggatgcttgttgcgccattg |
47466724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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