View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649_low_8 (Length: 320)

Name: NF1649_low_8
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1649_low_8
NF1649_low_8
[»] scaffold0392 (1 HSPs)
scaffold0392 (1-35)||(12930-12964)
[»] chr8 (6 HSPs)
chr8 (1-35)||(5110450-5110484)
chr8 (1-35)||(36127115-36127149)
chr8 (3-35)||(1172832-1172864)
chr8 (3-35)||(3613127-3613159)
chr8 (1-29)||(10787410-10787438)
chr8 (1-29)||(35024805-35024833)
[»] chr7 (4 HSPs)
chr7 (1-35)||(26253582-26253616)
chr7 (1-35)||(44525185-44525219)
chr7 (1-29)||(21832448-21832476)
chr7 (1-29)||(31717125-31717153)
[»] chr6 (4 HSPs)
chr6 (1-35)||(32542315-32542349)
chr6 (1-29)||(10380254-10380282)
chr6 (1-29)||(16465150-16465178)
chr6 (3-35)||(33599519-33599551)
[»] chr5 (5 HSPs)
chr5 (1-35)||(4590915-4590949)
chr5 (1-35)||(9111413-9111447)
chr5 (1-35)||(38900508-38900542)
chr5 (1-35)||(42547255-42547289)
chr5 (1-29)||(34448547-34448575)
[»] chr4 (7 HSPs)
chr4 (1-35)||(5092954-5092988)
chr4 (1-35)||(24285168-24285202)
chr4 (1-35)||(40186489-40186523)
chr4 (1-35)||(52921902-52921936)
chr4 (3-35)||(26618475-26618507)
chr4 (3-35)||(43594266-43594298)
chr4 (3-35)||(47812151-47812183)
[»] chr3 (5 HSPs)
chr3 (1-35)||(30640509-30640543)
chr3 (1-35)||(46710645-46710679)
chr3 (1-35)||(51444788-51444822)
chr3 (1-29)||(28511750-28511778)
chr3 (1-29)||(48381417-48381445)
[»] chr2 (3 HSPs)
chr2 (1-35)||(1721789-1721823)
chr2 (1-35)||(37600870-37600904)
chr2 (1-35)||(42185558-42185592)
[»] chr1 (5 HSPs)
chr1 (1-35)||(16070268-16070302)
chr1 (1-35)||(36219254-36219288)
chr1 (1-35)||(39757470-39757504)
chr1 (1-35)||(39762824-39762858)
chr1 (1-29)||(20754731-20754759)
[»] scaffold0936 (1 HSPs)
scaffold0936 (3-35)||(1060-1092)


Alignment Details
Target: scaffold0392 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12964 - 12930
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  12964 tctaaaattttccttcaacttttaatccctataaa 12930  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5110450 - 5110484
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  5110450 tctaaaattttccttcaacttttaatccctataaa 5110484  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36127149 - 36127115
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  36127149 tctaaaattttccttcaacttttaatccctataaa 36127115  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 1172832 - 1172864
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    |||||||||||||||||||||||||| ||||||    
T  1172832 taaaattttccttcaacttttaatccgaataaa 1172864  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 3613159 - 3613127
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  3613159 taaaattttccttcaacttttaatccctataaa 3613127  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10787438 - 10787410
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  10787438 tctaaaattttccttcaacttttaatccc 10787410  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35024833 - 35024805
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  35024833 tctaaaattttccttcaacttttaatccc 35024805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26253616 - 26253582
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  26253616 tctaaaattttccttcaacttttaatccctataaa 26253582  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44525185 - 44525219
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44525185 tctaaaattttccttcaacttttagtcccaataaa 44525219  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21832476 - 21832448
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  21832476 tctaaaattttccttcaacttttaatccc 21832448  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31717153 - 31717125
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  31717153 tctaaaattttccttcaacttttaatccc 31717125  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32542349 - 32542315
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  32542349 tctaaaattttccttcaacttttaatccctataaa 32542315  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10380254 - 10380282
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  10380254 tctaaaattttccttcaacttttaatccc 10380282  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16465178 - 16465150
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  16465178 tctaaaattttccttcaacttttaatccc 16465150  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 33599519 - 33599551
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    |||||||||||||||||||||| ||||||||||    
T  33599519 taaaattttccttcaacttttagtcccaataaa 33599551  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4590915 - 4590949
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  4590915 tctaaaattttccttcaacttttaatccctataaa 4590949  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9111413 - 9111447
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  9111413 tctaaaattttccttcaacttttaatccctataaa 9111447  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38900508 - 38900542
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  38900508 tctaaaattttccttcaacttttaatccctataaa 38900542  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42547255 - 42547289
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  42547255 tctaaaattttccttcaacttttaatccctataaa 42547289  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34448547 - 34448575
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  34448547 tctaaaattttccttcaacttttaatccc 34448575  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5092988 - 5092954
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  5092988 tctaaaattttccttcaacttttaatccctataaa 5092954  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24285202 - 24285168
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  24285202 tctaaaattttccttcaacttttaatccccataaa 24285168  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40186523 - 40186489
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  40186523 tctaaaattttccttcaacttttaatccctataaa 40186489  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52921936 - 52921902
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  52921936 tctaaaattttccttcaacttttaatccctataaa 52921902  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 26618475 - 26618507
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  26618475 taaaattttccttcaacttttaatccctataaa 26618507  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 43594266 - 43594298
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  43594266 taaaattttccttcaacttttaatccctataaa 43594298  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 47812151 - 47812183
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  47812151 taaaattttccttcaacttttaatccctataaa 47812183  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30640509 - 30640543
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  30640509 tctaaaattttccttcaacttttaatccctataaa 30640543  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46710679 - 46710645
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  46710679 tctaaaattttccttcaacttttaatccctataaa 46710645  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51444822 - 51444788
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  51444822 tctaaaattttccttcaacttttaatccctataaa 51444788  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28511778 - 28511750
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  28511778 tctaaaattttccttcaacttttaatccc 28511750  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48381445 - 48381417
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  48381445 tctaaaattttccttcaacttttaatccc 48381417  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1721789 - 1721823
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  1721789 tctaaaattttccttcaacttttaatccctataaa 1721823  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37600904 - 37600870
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  37600904 tctaaaattttccttcaacttttaatccctataaa 37600870  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42185592 - 42185558
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  42185592 tctaaaattttccttcaacttttaatccctataaa 42185558  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16070302 - 16070268
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  16070302 tctaaaattttccttcaacttttaatccctataaa 16070268  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36219288 - 36219254
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  36219288 tctaaaattttccttcaacttttaatccctataaa 36219254  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39757470 - 39757504
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  39757470 tctaaaattttccttcaacttttaatccctataaa 39757504  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39762824 - 39762858
Alignment:
Q  1 tctaaaattttccttcaacttttaatcccaataaa 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  39762824 tctaaaattttccttcaacttttaatccctataaa 39762858  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20754759 - 20754731
Alignment:
Q  1 tctaaaattttccttcaacttttaatccc 29  Q
    |||||||||||||||||||||||||||||    
T  20754759 tctaaaattttccttcaacttttaatccc 20754731  T

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Target: scaffold0936 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 1092 - 1060
Alignment:
Q  3 taaaattttccttcaacttttaatcccaataaa 35  Q
    |||||||||||||||||||||| ||||||||||    
T  1092 taaaattttccttcaacttttagtcccaataaa 1060  T

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