View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16500_high_5 (Length: 224)
Name: NF16500_high_5
Description: NF16500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16500_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 3374270 - 3374396
Alignment:
| Q |
80 |
agtcaattttcatagatgatcaaaatgcatttggtcctaaatttcttttttaagctgacatggattttacctataaactttggtcagaagtatttcaatc |
179 |
Q |
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| T |
3374270 |
agtcaattttcatagatgatcaaaatgcatttggtcctaaatttcttttttaagctcacatggattttacctataaactttggtcagaagtatttcaatc |
3374369 |
T |
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| Q |
180 |
tctcccataaagtactcgcccaacccc |
206 |
Q |
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| T |
3374370 |
tctcccataaagtactcgcccaacccc |
3374396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 3374179 - 3374242
Alignment:
| Q |
8 |
ataattctatacattggctgcaaattcgttggatatgagtgcaagtaaacgtagttacacctta |
71 |
Q |
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| T |
3374179 |
ataattctatacattggctgcaaattcgttggatatgagtgcaagtaaacgtagttacacctta |
3374242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 3348875 - 3348942
Alignment:
| Q |
135 |
tgacatggattttacctataaactttggtcagaagtatttcaatctctcccataaagtactcgcccaa |
202 |
Q |
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| T |
3348875 |
tgacatgggttttacctataaacttgtgccaaaaatacttcaatctctcccacaaagtactctcccaa |
3348942 |
T |
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