View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16500_low_1 (Length: 360)
Name: NF16500_low_1
Description: NF16500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16500_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 48473611 - 48473946
Alignment:
| Q |
17 |
aaatcataattgtcaatttcaaaaggtatcggaattaaacctgcaaatttcatttttatttgaatgaaaccaaagtttgatcaccccatgtagcttttat |
116 |
Q |
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| T |
48473611 |
aaatcataattgtcaatttcaaaaggtatcggaattaaacctgcaaatttcatttttatttaaatgaaaccaaagtttgatcaccccatgtagcttttat |
48473710 |
T |
|
| Q |
117 |
cctttgtaaaggccaaatcaaatatagcagtcatggttgtcacaggagtattttttcaaagcatgaaatggtcataacatattgagtcgccttaaattta |
216 |
Q |
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| T |
48473711 |
cctttgtaaaggccatatcaaatatagcagtcatggttgtcacaggagtattttttcaaagcatgaaatggtcataacatattgagtcgccttaaattta |
48473810 |
T |
|
| Q |
217 |
tgattccgttatttctctttctaagattatgcaagttgttataacaagattggctatatatatgatgtaacaatgaaccaactctgatatgttaaataat |
316 |
Q |
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| T |
48473811 |
cgattccgttatttctctttctaagattatgcaagttgttataacaagattggctatatatatgatgtaacaatgaaccaactctgatatgttaaataat |
48473910 |
T |
|
| Q |
317 |
aacaagggttcactttcttccccaatttttcatctc |
352 |
Q |
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| T |
48473911 |
aacaagggttcactttcttccccaatttttcatctc |
48473946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 48476944 - 48477026
Alignment:
| Q |
116 |
tcctttgtaaaggccaaatcaaatatagcagtcatggttgtcacaggagtattttttcaaagcatgaaatggtcataacatat |
198 |
Q |
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| T |
48476944 |
tccttagtaaaagccagatcaaatatagcagtgatggttgtcaaagaggtatcttttcaaagcatgaaatcgtcataatatat |
48477026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 27758353 - 27758212
Alignment:
| Q |
209 |
taaatttatgattccgttatttctcttt-ctaagattatgcaagttgttataacaagattggctatatatatgatgtaacaatgaaccaactctgatatg |
307 |
Q |
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||||||||||||| |||||||| |||| || ||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||| || |||||| |
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| T |
27758353 |
taaatttatgattatgttatttcccttttcttagattatgcaagttgttatgctaagattgactatatat--gatgtaatagtgaaccaattcagatatg |
27758256 |
T |
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| Q |
308 |
ttaaataataacaagggttcactttcttccccaatttttcatct |
351 |
Q |
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| T |
27758255 |
ttgaataataataaggtttcactttcttccttaatttgtcatct |
27758212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 35434532 - 35434595
Alignment:
| Q |
273 |
tatatatgatgtaacaatgaaccaactctgatatgttaaataataacaagggttcactttcttc |
336 |
Q |
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| T |
35434532 |
tatatatgatgtaacgttgaaccaattctaatatgataaataataataaggtttcgctttcttc |
35434595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 993876 - 993938
Alignment:
| Q |
209 |
taaatttatgattccgttatttctcttt-ctaagattatgcaagttgttataacaagattggc |
270 |
Q |
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|||||||| |||| | |||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
993876 |
taaatttacgatttcattatttctcttttcttagattatgcaagttgttatgccaagattggc |
993938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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