View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16500_low_2 (Length: 324)
Name: NF16500_low_2
Description: NF16500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16500_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 46 - 307
Target Start/End: Complemental strand, 32896543 - 32896282
Alignment:
| Q |
46 |
caagaaattcgtatcgattgagtttagtttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtc |
145 |
Q |
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| T |
32896543 |
caagaaattcgtatcgattgagtttagtttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtc |
32896444 |
T |
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| Q |
146 |
taaatggccacctaggttgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaa |
245 |
Q |
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| T |
32896443 |
taaatggccacctaggttgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaa |
32896344 |
T |
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| Q |
246 |
agcgtttacattatagccagaataaacctcatatcctcaagttgtgcaaattttatcatatg |
307 |
Q |
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| T |
32896343 |
agcgtttacattatagccagaataaacctcaaatcctcaagttgtgcaaattttatcatatg |
32896282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 246
Target Start/End: Complemental strand, 32885751 - 32885583
Alignment:
| Q |
74 |
ttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacct-aggttgtataattc |
172 |
Q |
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|||||| | ||||||||| |||||| |||| || || |||||| |||||||||||| | ||||||||||||||||||| | ||||| || ||||| |
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| T |
32885751 |
ttaatatcaaatcgagattcgactactatgcatcgtaagatactaataaccatgtaagt-----gatttgtctaaatggccacattaggttataaaattc |
32885657 |
T |
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| Q |
173 |
tggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaa |
246 |
Q |
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|||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
32885656 |
tggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaa |
32885583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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