View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16500_low_3 (Length: 293)
Name: NF16500_low_3
Description: NF16500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16500_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 32896907 - 32896645
Alignment:
| Q |
11 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
110 |
Q |
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| T |
32896907 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
32896808 |
T |
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| Q |
111 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896807 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
32896708 |
T |
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| Q |
211 |
taagttgatacatcatatattcaagtaataatagaacaaattaatgacaaaagtaaaaggttg |
273 |
Q |
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| T |
32896707 |
taagttgatacatcatatattcaagtaataatagaacaaattaatgacaaaagtaaaaggttg |
32896645 |
T |
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