View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16501_high_1 (Length: 470)
Name: NF16501_high_1
Description: NF16501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16501_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 7225519 - 7225759
Alignment:
| Q |
9 |
catcatcattaattaagaaagttgaacaaccatagaggttcaattaattaatgcttaagttagctcaggttaatttgcaatggacatattcagtctcttt |
108 |
Q |
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| T |
7225519 |
catcatcattaattaagaaagttgaacaaccatagaggttcaattaattaatgcttaagttagctcaggttaatttgcaatggacatattcagtctcttt |
7225618 |
T |
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| Q |
109 |
cctacttttcctaaatttctttaaagtttcacgtatgaaagctccggttagctgccatttcaataaaatgatgtttttaacactcatttgtctaacacca |
208 |
Q |
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| T |
7225619 |
cctacttttcctaaatttccttaaagtttcacgtatgaaagctccggttagctgccatttcaataaaatgatgtttttaacactcatttgtctaacacca |
7225718 |
T |
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| Q |
209 |
aatgcatgcattatgcatgatatatgctttgcgctcctatt |
249 |
Q |
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| T |
7225719 |
aatgcatgcattatgcatgatatatgctttgcgctcctatt |
7225759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 285 - 470
Target Start/End: Original strand, 7225760 - 7225944
Alignment:
| Q |
285 |
cgcgtaaaatgttcgatatcaaaagaaagagactttacatcatctaaacattttaagacattaaatttatagatcatattttttatatatcaaacatttt |
384 |
Q |
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||||||||||||| | |||||||||||| |||| ||||||||| ||||||| |||||| |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
7225760 |
cgcgtaaaatgtttggtatcaaaagaaaaagacgttacatcatttaaacatcttaagatattagatttatagattatattttttatatatcaaacatttt |
7225859 |
T |
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| Q |
385 |
acatattcatagacgatttgagactaaattgctcaagcttctaaccct---ttatacattccaataatatatatacactaatggatgcc |
470 |
Q |
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| T |
7225860 |
acatattcatagacgatgtgaaactaaattgctcacgcttctaaccctgtattatacattccaata----atatacactaatggatgcc |
7225944 |
T |
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