View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16501_low_3 (Length: 267)
Name: NF16501_low_3
Description: NF16501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16501_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12740518 - 12740347
Alignment:
| Q |
1 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12740518 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
12740419 |
T |
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| Q |
101 |
aacagtataactgtgcttgtaactgttgattctgatagaccaattgacccctattctgctattggtctgtag |
172 |
Q |
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| T |
12740418 |
aacagtataactgtgcttgtaactgttgattctgatagaccaattgacccctattctgctattggtctgtag |
12740347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12803342 - 12803171
Alignment:
| Q |
1 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12803342 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
12803243 |
T |
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| Q |
101 |
aacagtataactgtgcttgtaactgttgattctgatagaccaattgacccctattctgctattggtctgtag |
172 |
Q |
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| T |
12803242 |
aacagtataactgtgcttgtaactgttgattctgatagaccaattgacccctattctgctattggtctgtag |
12803171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 12733011 - 12732882
Alignment:
| Q |
1 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
100 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| || | |||| |||||||| |||||||| ||||||| |
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| T |
12733011 |
agtgaaacattctgcaagtgtggtgaaggatggagttgttccatttttaggactgaaggtcctgatgcagactcaggcaagggatttgctgattgcactc |
12732912 |
T |
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| Q |
101 |
aacagtataactgtgcttgtaactgttgat |
130 |
Q |
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|||| |||||||||| |||||| ||||||| |
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| T |
12732911 |
aacaatataactgtgattgtaaatgttgat |
12732882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 12795813 - 12795684
Alignment:
| Q |
1 |
agtgaaacattctgcaaatgtggtgaagggtggagttgttccattttcaaaactgaaggccctggtgtaaactctggcaagggctttgctgaatgcactc |
100 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| || | |||| |||||||| |||||||| ||||||| |
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| T |
12795813 |
agtgaaacattctgcaagtgtggtgaaggatggagttgttccatttttaggactgaaggtcctgatgcagactcaggcaagggatttgctgattgcactc |
12795714 |
T |
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| Q |
101 |
aacagtataactgtgcttgtaactgttgat |
130 |
Q |
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|||| |||||||||| |||||| ||||||| |
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| T |
12795713 |
aacaatataactgtgattgtaaatgttgat |
12795684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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