View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16502_high_12 (Length: 338)

Name: NF16502_high_12
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16502_high_12
NF16502_high_12
[»] chr8 (3 HSPs)
chr8 (15-320)||(3779753-3780059)
chr8 (21-114)||(3771419-3771519)
chr8 (219-298)||(18699008-18699087)
[»] chr1 (4 HSPs)
chr1 (220-317)||(15728194-15728291)
chr1 (218-307)||(43702696-43702785)
chr1 (230-306)||(27740570-27740646)
chr1 (209-300)||(12268181-12268272)
[»] scaffold0050 (1 HSPs)
scaffold0050 (218-299)||(34340-34421)
[»] chr5 (2 HSPs)
chr5 (218-305)||(37145793-37145880)
chr5 (216-305)||(24765034-24765123)
[»] chr7 (2 HSPs)
chr7 (216-306)||(9907090-9907180)
chr7 (214-256)||(31115333-31115375)
[»] chr4 (2 HSPs)
chr4 (216-306)||(48087288-48087378)
chr4 (218-306)||(23125837-23125926)
[»] chr3 (1 HSPs)
chr3 (217-309)||(1765743-1765835)
[»] scaffold0166 (1 HSPs)
scaffold0166 (216-305)||(7531-7620)
[»] chr2 (1 HSPs)
chr2 (219-298)||(15736050-15736129)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 3780059 - 3779753
Alignment:
Q  15 tatcagtatgacacagctttgcattaaattcatagaatcataaaaaatccaacctcaaataattgtggtactagttgtaaataaaataaaattggtgaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3780059 tatcagtatgacacagctttgcattaaattcatagaatcataaaaaatccaacctcaaataattgtggtactagttgtaaataaaataaaattggtgaaa 3779960  T
Q  115 gtcaacttgctggttacttgtagggttgaggggttttgattttgattgcttcctgcatcatt-tgaccatctagaataaataatttaggtgtcatgcact 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3779959 gtcaacttgctggttacttgtagggttgaggggttttgattttgattgcttcctgcatcattgtgaccatctagaataaataatttaggtgtcatgcact 3779860  T
Q  214 ttagaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatggtctatg 313  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  3779859 ttagaaaaaagttattaaataggtcatattaataattcaatgtcattatattttaacaaagtttttttattagtgtacaatttattatatatggtctatg 3779760  T
Q  314 aaaacta 320  Q
    |||||||    
T  3779759 aaaacta 3779753  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 3771519 - 3771419
Alignment:
Q  21 tatgacacagctttgcattaaattcatagaatcat-aaaaaatccaacctcaaat-aattg-----tggtactagttgtaaataaaataaaattggtgaa 113  Q
    ||||||||||||| ||| |||||||||||||| || ||||||||||||||||||| |||||     | |||||||| |||||||||||||||||||||||    
T  3771519 tatgacacagcttagcactaaattcatagaattataaaaaaatccaacctcaaataaattgtagtctagtactagtggtaaataaaataaaattggtgaa 3771420  T
Q  114 a 114  Q
    |    
T  3771419 a 3771419  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 18699087 - 18699008
Alignment:
Q  219 aaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttat 298  Q
    ||||||||| ||||||| ||||||||||||| ||||| |||| ||||| | |||||||  |||||| ||||| |||||||    
T  18699087 aaaaagttaataaatagatcatattaataactcaatgccattgtatttcatcaaagttgattgatttgtgtacaatttat 18699008  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 15728291 - 15728194
Alignment:
Q  220 aaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatggtctatgaaaa 317  Q
    |||||||| |||||||||| |||||||||| |||||||||| ||||| ||||||||||||| ||| ||||| |||||||||  ||||| ||| |||||    
T  15728291 aaaagttactaaataggtcctattaataactcaatgtcattgtatttcaacaaagtttttttatttgtgtacaatttattacgtatggcctaagaaaa 15728194  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 43702696 - 43702785
Alignment:
Q  218 aaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatgg 307  Q
    |||||||||| ||||||  |||||||||||||  ||||||||| ||||| |||||||||| |||||| ||||| ||||||||| ||||||    
T  43702696 aaaaaagttaataaatatatcatattaataacttaatgtcattgtatttcaacaaagtttattgatttgtgtacaatttattacatatgg 43702785  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 27740646 - 27740570
Alignment:
Q  230 aaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatg 306  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||||||| |||||| ||||| ||||||||| |||||    
T  27740646 aaatagatcatattaataactcaatgtcattgtatttcaacaaagtttattgatttgtgtacaatttattacatatg 27740570  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 12268181 - 12268272
Alignment:
Q  209 gcactttagaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttatta 300  Q
    |||| |||||||||||| | ||||||| || |||||||||| |||||||||| ||||| || ||||||| ||| || ||||| |||||||||    
T  12268181 gcaccttagaaaaaagtgaataaatagatcctattaataactcaatgtcattgtatttcaaaaaagtttattggtttgtgtacaatttatta 12268272  T

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Target: scaffold0050 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 34340 - 34421
Alignment:
Q  218 aaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttatt 299  Q
    ||||||||||||||||||||| |||||||||  |||||||||| ||||| |||||| ||| |||||| ||||| ||||||||    
T  34340 aaaaaagttattaaataggtcgtattaataattcaatgtcattgtatttcaacaaaatttcttgatttgtgtataatttatt 34421  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 37145793 - 37145880
Alignment:
Q  218 aaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatat 305  Q
    |||||| ||| ||||||| || ||||||||||||||||| ||||||||| || ||||||| |||||| ||||| ||||||||| ||||    
T  37145793 aaaaaaattaataaatagatcctattaataacccaatgttattatatttcaaaaaagtttattgatttgtgtacaatttattacatat 37145880  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 24765034 - 24765123
Alignment:
Q  216 agaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatat 305  Q
    |||||||||||| ||||||| |||||||| |||| |||||| ||| ||||| || ||||||| ||| || ||||| ||||||||| ||||    
T  24765034 agaaaaaagttaataaatagatcatattattaactcaatgtgattgtatttcaaaaaagtttattggtttgtgtacaatttattacatat 24765123  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 9907090 - 9907180
Alignment:
Q  216 agaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatg 306  Q
    |||||||||||||||||||| || |||||||||| |||||||||| ||| | || ||||||| ||| || ||||| ||||||||| |||||    
T  9907090 agaaaaaagttattaaatagatcctattaataactcaatgtcattgtatctcaaaaaagtttattggtttgtgtacaatttattacatatg 9907180  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 31115375 - 31115333
Alignment:
Q  214 ttagaaaaaagttattaaataggtcatattaataacccaatgt 256  Q
    |||||||||||||| ||||||||||||||||||| | ||||||    
T  31115375 ttagaaaaaagttactaaataggtcatattaatagctcaatgt 31115333  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 48087378 - 48087288
Alignment:
Q  216 agaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatg 306  Q
    |||| ||||||| ||||||| ||||||||||||| |||||| ||| ||||| |||||||||| || ||| || || |||||||||||||||    
T  48087378 agaagaaagttaataaatagatcatattaataactcaatgttattgtatttcaacaaagtttattcatttgtatacaatttattatatatg 48087288  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 23125837 - 23125926
Alignment:
Q  218 aaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttga-ttagtgtagaatttattatatatg 306  Q
    |||||||||| ||||||  ||||||||||||| |||||||||| ||||| |||||||||| || | || ||||| ||||||||| |||||    
T  23125837 aaaaaagttaataaataaatcatattaataactcaatgtcattgtatttcaacaaagtttattaattttgtgtacaatttattacatatg 23125926  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 1765835 - 1765743
Alignment:
Q  217 gaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatatggtc 309  Q
    ||||||||||| ||||||| || ||||| |||| |||||||||| ||||| || ||||||| ||| || ||||| ||||||||| ||||||||    
T  1765835 gaaaaaagttaataaatagatcctattattaactcaatgtcattgtatttcaaaaaagtttattggtttgtgtataatttattacatatggtc 1765743  T

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Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 7531 - 7620
Alignment:
Q  216 agaaaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttattatatat 305  Q
    |||||||||||| ||||||| |||||||| |||| |||||| ||| ||||| || ||||||| ||| || ||||| ||||||||| ||||    
T  7531 agaaaaaagttaataaatagatcatattattaactcaatgtgattgtatttcaaaaaagtttattggtttgtgtacaatttattacatat 7620  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 15736129 - 15736050
Alignment:
Q  219 aaaaagttattaaataggtcatattaataacccaatgtcattatattttaacaaagttttttgattagtgtagaatttat 298  Q
    ||||||||| ||||||| ||||||||||||| ||||| |||| ||||| | |||||||  |||||| ||||| |||||||    
T  15736129 aaaaagttaataaatagatcatattaataactcaatgccattgtatttcatcaaagttgattgatttgtgtacaatttat 15736050  T

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