View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_13 (Length: 311)
Name: NF16502_high_13
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 48636101 - 48636228
Alignment:
| Q |
12 |
gaaaaaggcgttattattatatcattatcttcttcttcaagatctcacagaacaaccgaccccaacaacaatggccgattcagatcacactcagttcgac |
111 |
Q |
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| T |
48636101 |
gaaaaaggcgttattattatatcattatcttcttcttcaagatctcacagaacaaccgaccccaacaacaatggccgattcagatcacactcagttcgac |
48636200 |
T |
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| Q |
112 |
aacaacgacaacgatgatttcgaagttc |
139 |
Q |
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| T |
48636201 |
aacaacgacaacgatgatttcgaagttc |
48636228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 48636291 - 48636383
Alignment:
| Q |
202 |
cgaccatccaagaaacccaaaaccaacaaaacgacaccgttccctggcaaagagaacattccccctttcgaaggttacgatatcggtaacagc |
294 |
Q |
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| T |
48636291 |
cgaccatccaagaaacccaaaaccaacaaaacgacatcgttccctggcaaagagaacattccccctttcgaaggttacgatatcggtaacagc |
48636383 |
T |
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