View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_15 (Length: 275)
Name: NF16502_high_15
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 39681760 - 39682017
Alignment:
| Q |
18 |
gatatcgggctgctaacaagcacagttttgcaaatattgtcatggtggtcattctcaaccattatgttgtatgttcctgtggaatctgtcactccttctg |
117 |
Q |
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| T |
39681760 |
gatattgggctgctaacaagcacagttttgcaaatattgtcatggtggtcattctcaaccattatgttgtatgttcctgtggaatctgtcactccttccg |
39681859 |
T |
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| Q |
118 |
tgtagaaaacttcgtccatagtcttccggtcttggcacctaattcccacctttgcacctaatcaagaatcgtcacaataacatacacacatcaatcataa |
217 |
Q |
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| T |
39681860 |
tgtagaaaacttcgtccatagtcttccggtcttggcacctaattcccacctttgcacctaatcaagaatcgtcacaataacatacacacatcaatcataa |
39681959 |
T |
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| Q |
218 |
gaaaacattaaattagaaatgatttgattcgtatatgcaaacggtgcaaaccttttta |
275 |
Q |
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| T |
39681960 |
gaaaacgttaaattagaaatgatttgattcgtatatgcaaacggtgcaaaccttttta |
39682017 |
T |
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