View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_16 (Length: 268)
Name: NF16502_high_16
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 31805836 - 31806092
Alignment:
| Q |
15 |
accatatacaattaatttttgttggcaggatggtaaagtgaatccagtgatcaaagagagtatatgctatggtttcattttataggtcaagcgatattat |
114 |
Q |
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| T |
31805836 |
accatatacaattaatttttgctggcaggatgataaagtgaatccagtgatcaaagagagtatatgctatggtttcattttataggtcaagcgatatcat |
31805935 |
T |
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| Q |
115 |
gtggaagaacta----aacgatactcttgatttggtgccaattgggcttggcatggaaatggaaggaaagctgaatggtattttatcatcnnnnnnngtg |
210 |
Q |
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| T |
31805936 |
gtggaagaactaaattaacgatactcttgatttagtgccaattgggcttggcatggaaatggaaggaaagctgaatggtattttatcatctttttttgtg |
31806035 |
T |
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| Q |
211 |
ttcaaatatttttaaagacactgaaatgaaactgnnnnnnnttggtttaattcatct |
267 |
Q |
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| T |
31806036 |
ttcaaatatttttaaagacactgaaatgaaactgaaaaaaattggtttaattcatct |
31806092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 31790394 - 31790506
Alignment:
| Q |
89 |
tcattttataggtcaagcgatattatgtggaagaactaaacgatactcttgatttggtgccaattgg-gcttggcatggaaatggaaggaaagctgaatg |
187 |
Q |
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| T |
31790394 |
tcattttataggtcaaacgagattatgtggaaggattaaatgatactcttgatttagtaccaattggtgcttggcatggaaatggaaggaaagctggatg |
31790493 |
T |
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| Q |
188 |
gtattttatcatc |
200 |
Q |
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| T |
31790494 |
gtagtttatcatc |
31790506 |
T |
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