View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_2 (Length: 549)
Name: NF16502_high_2
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 54 - 536
Target Start/End: Complemental strand, 54702378 - 54701897
Alignment:
| Q |
54 |
tgccttgcaacgctttcgatgcacctatccttcttaaaccttaatcatcaattttccaatcctgtagattatcgataatggaagatattttctggatgag |
153 |
Q |
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| T |
54702378 |
tgccttgcaacgctttcgatgcacctatccttcttaaaccttaatcatcaattttccaatcctgtagattatcgataatggaagatattttctggatgag |
54702279 |
T |
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| Q |
154 |
gagctgtttcaattattaaacagagttcagtttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccact |
253 |
Q |
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| T |
54702278 |
gagctgtttcaattattaaacagagttcagtttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccact |
54702179 |
T |
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| Q |
254 |
gactcattcataggggaaaactaccttgatctaaatggtaataaagatgacatttattccnnnnnnnnntatacaagatttttaatgtgttgaccacaag |
353 |
Q |
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| T |
54702178 |
gactcattcatagggg-aaactaccttgatctaaatggtaataaagatgacatttattccaaaaaaaaatatacaagatttttaatgtgttgaccacaag |
54702080 |
T |
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| Q |
354 |
attttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacaaagactctaatgagttaactgtgaaatcttcggcttctttcaaga |
453 |
Q |
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| T |
54702079 |
attttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacacagactctaatgagttaactgtgacatcttgggcttctttcaaga |
54701980 |
T |
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| Q |
454 |
tcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcct |
536 |
Q |
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| T |
54701979 |
tcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcct |
54701897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 54702399 - 54702371
Alignment:
| Q |
18 |
gacatgaagaacttcctcatatgccttgc |
46 |
Q |
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| T |
54702399 |
gacatgaagaacttcctcatatgccttgc |
54702371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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