View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_6 (Length: 403)
Name: NF16502_high_6
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 32914741 - 32915115
Alignment:
| Q |
13 |
cagacacgacacaaataatttaacacggaaaatannnnnnnnaaaatgacattattaaaaaactgacatgatttattggaatcatgtattggtgtcagat |
112 |
Q |
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| T |
32914741 |
cagacacgacacaaataatttgacacagaaaataatttttaaaaaatgacattattaaaaaactgacatgatttattggaatcatgtgttggtgtcggat |
32914840 |
T |
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| Q |
113 |
atgttacatatctgacatctaaacacgcctaatccgaggattacatacatgtgcttcatagatcgctagagaccataaaccacatgtgacacttttccac |
212 |
Q |
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| T |
32914841 |
atgttacatatctgacatctaaacacgcctgatccgaagattagatacatgtgcttcatagatcgctagagacaataaaccacatgtaacacttttccac |
32914940 |
T |
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| Q |
213 |
tagcaacacaatggttagttatctcatcattatcataatgacgcgagatagtggtttccaattgtataacaacatcaaaatctgaaagcagacacagcaa |
312 |
Q |
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| T |
32914941 |
tagcaacacaatggctagttatctaatcattatcataatgacgcgagatagtggtttccaattgtataacaacatcaaaatctgaaagcagacacagcaa |
32915040 |
T |
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| Q |
313 |
agtgttcattccgtcctaaacaaacaaaggaacaaaggaataaaacaaacaataataatttatacaaccaccttt |
387 |
Q |
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| T |
32915041 |
agtgttcattccgtcctaaacaaacaaacaaacaaaggaacaaaacaaacaataataatttatacaaccaccttt |
32915115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 17155541 - 17155597
Alignment:
| Q |
96 |
atgtattggtgtcagatatgttacatatctgacatctaaacacgcctaatccgagga |
152 |
Q |
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| T |
17155541 |
atgtatcggtgtcagatatgatacatatccgacatcaaaacacatctaatacgagga |
17155597 |
T |
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