View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_7 (Length: 395)
Name: NF16502_high_7
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 37 - 384
Target Start/End: Complemental strand, 35649183 - 35648822
Alignment:
| Q |
37 |
tgcttaagattgatgtcaacgcacactgtaaaaataaactgtctcatgtaatttttcaaaaagctttaaattgttgcgcttttgaagttctagttgtgnn |
136 |
Q |
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| T |
35649183 |
tgcttaagattgatgtcaacgcatactgtaaaaataaactgtctcatgtaatttttcaaaa-gctttaaattgttgcgcttttgaagttctagttgtatt |
35649085 |
T |
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| Q |
137 |
nnnnnnccttcactccacgggaagcaacaattgttcatgat---------------tgtcaaaaagaacatgaactgtgtcgttttctacagctacgttc |
221 |
Q |
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| T |
35649084 |
ttttttccttcactccacgggaagcaacaattgttcatgatacaatgatatctgattgtcaaaaagaacatgaactgtgttgttttctacagctacgttc |
35648985 |
T |
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| Q |
222 |
tggaatctgggcatcatcataacattaactcccatcagagacaagaaaggtaactctccaaaaaatagtttgtttaaagagctgaaaaaatggtaatcca |
321 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35648984 |
tggaatcttgtcatcatcataacattaactcccatcagagacaagaagggtaactctccaaaaaatagtttgtttaaagagctgaaaaaatggtaatcca |
35648885 |
T |
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| Q |
322 |
ttagtataatgtaatatatactacaaccaagttctttaaaacaagcatcataaagtaagtatt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35648884 |
ttagtataatgtaatatatactacaaccaagttctttaaaacaagcatcataaagtgagtatt |
35648822 |
T |
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