View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_high_9 (Length: 384)
Name: NF16502_high_9
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 8715632 - 8715283
Alignment:
| Q |
23 |
atgcggttgtataatccacaagctgattccatgtactaacaaacatcggcaactattgcaaaagtttcagttatgtgggaggataacatcaatgcagtta |
122 |
Q |
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| T |
8715632 |
atgcggttgtataatccacaagctgattccatgtactaataaacatcggcaactattgcaaaagtttcagttatgtgggaggataacatcaatgcagtta |
8715533 |
T |
|
| Q |
123 |
gctatatagatccacttgtttgcttcatagatttattatatggtgattacattgtgtgctctttgttttcagttcaaagcatagagaatgaactggagga |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8715532 |
gctatatagatccacttgtttgcttcatagatttattatctggtgattacattgtgtgctctttgttttcagttcaaagcatagagaatgaactggagga |
8715433 |
T |
|
| Q |
223 |
ttcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaagcttctttgggttccttctatttggtgaagga |
322 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8715432 |
ttcctcacggatacgtggggttgtgcgtacatcccttactctatgctcttcggtgtacttactgacaagcttctttgggttccttctatttggtgaagga |
8715333 |
T |
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| Q |
323 |
gttcttgatgatgttcttgccaattttgatgctgatcttggaattccctt |
372 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8715332 |
gttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
8715283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 5968511 - 5968864
Alignment:
| Q |
19 |
cttaatgcggttgtataatccacaagctgattccatgtactaacaaacatcggcaactattgcaaaagtttcagttatgtgggaggataacatcaatgca |
118 |
Q |
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| T |
5968511 |
cttaatgtggttgtataatccacaagctgattccacgtactaataaacatcggcaactattgcaaaagtttcggttatgtgggaggatgacatcaatgca |
5968610 |
T |
|
| Q |
119 |
gttagctatatagatccacttgtttgcttcatagatttattatatggtgattacattgtgtgctctttgttttcagttcaaagcatagagaatgaactgg |
218 |
Q |
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| T |
5968611 |
gttagctatatagatccacttgtttgcttcatagatttattatatggtgattacagtgtgtgctctttgttttcagttcaaagcatagagaatgaactgg |
5968710 |
T |
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| Q |
219 |
aggattcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaagcttctttgggttccttctatttggtga |
318 |
Q |
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| T |
5968711 |
aggattcctcacggatacgtggggttgtgcgtacttcccttactctatgctcttcggtgtacttactgacaagcttctttgggttccttctatttggtga |
5968810 |
T |
|
| Q |
319 |
aggagttcttgatgatgttcttgccaattttgatgctgatcttggaattccctt |
372 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5968811 |
aggagttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
5968864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 174 - 372
Target Start/End: Original strand, 5984675 - 5984873
Alignment:
| Q |
174 |
ttgtgtgctctttgttttcagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttc |
273 |
Q |
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||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||| |
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| T |
5984675 |
ttgtgtgctctttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgtgtacttcccttactctatgctcttc |
5984774 |
T |
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| Q |
274 |
ggtgtacttactgacaagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatgctgatcttggaattccctt |
372 |
Q |
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| T |
5984775 |
ggtgtacttactgacaagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
5984873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 5963533 - 5963733
Alignment:
| Q |
174 |
ttgtgtgctctttgttttcagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttc |
273 |
Q |
| |
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||||||| ||||| ||| ||||||| | ||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
5963533 |
ttgtgtgttctttatttgcagttcataacattgataatgaactggaggattcctcacggatgcgtggggttgtgcgtacttcccttactctatgctcttc |
5963632 |
T |
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| Q |
274 |
ggtgtacttactgacaagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatgctgatcttggaattcccttt |
373 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||| ||| |
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| T |
5963633 |
agtatatgtactgacaagcttctttgggttccttctatttggtgaaggaactcttgatgatgtgcttgccaattttgatactgattttggaattcctttt |
5963732 |
T |
|
| Q |
374 |
g |
374 |
Q |
| |
|
| |
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|
| T |
5963733 |
g |
5963733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 374
Target Start/End: Original strand, 5935137 - 5935336
Alignment:
| Q |
175 |
tgtgtgctctttgttttcagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttcg |
274 |
Q |
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|||| ||||||| ||| ||||||| | |||||| |||||||||||||| |||||| |||| | ||| ||||||||| | |||||||||||||||||||| |
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| T |
5935137 |
tgtgcgctctttatttgcagttcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttca |
5935236 |
T |
|
| Q |
275 |
gtgtacttactgacaagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatgctgatcttggaattccctttg |
374 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||| || |||| |||||||| |||| |
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| T |
5935237 |
gtttacttactgacaagcttctttgggttccttctatttggtgacgatactcttcctgacgttcttgccaattttgatactaatctcggaattccttttg |
5935336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 192 - 374
Target Start/End: Complemental strand, 5628329 - 5628147
Alignment:
| Q |
192 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaag |
291 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| ||||| ||| | || ||||| ||||| |||| ||||||||| || ||||| ||| ||| ||| |
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| T |
5628329 |
cagttcacagcatagataatgaactcgaggacaactcacagatgcaaggcgttgtacgtacagccctcggtctatgctcatccgtgtatttaatgataag |
5628230 |
T |
|
| Q |
292 |
cttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatgctgatcttggaattccctttg |
374 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||| |||| |
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| T |
5628229 |
cttctttgggttcctcctatttggtgaaggaactcttgatgacgtacttgccaatttcgatgctgatcttggaattccttttg |
5628147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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