View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_1 (Length: 621)
Name: NF16502_low_1
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 275 - 604
Target Start/End: Original strand, 26957176 - 26957510
Alignment:
| Q |
275 |
tttgtaatgtaactgaatttgctcaaactactattttcgcaattcgcaataaaaaactctggtcaacacaattaaaagggatcatagctgcagtgtgaca |
374 |
Q |
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| T |
26957176 |
tttgtaatgcaacagaatttgctcaaactactattttcgcaattcgcaattaaaaactctggtcaacacaattaaaacggatcatagctgcagtgtgaca |
26957275 |
T |
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| Q |
375 |
acttttttattaaattgcatatcattgaacaatagcggttatagtgtaacggaatttgcacaaatcactattttccgtgatccgcaaaaattgataacac |
474 |
Q |
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| T |
26957276 |
aattttttattaaatcgcatatcattgaacaatagcggttatagtgtaacggaatttgcacaaatcactattttccgtgatctgc---aattgataacat |
26957372 |
T |
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| Q |
475 |
tggtcaacacaattgcggctatagtgccgatttag-------tgtgtagtgtaatggaatttgcacaaaccgcta-ttttttgcgatccgctcaaaaaca |
566 |
Q |
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| T |
26957373 |
tggttaacacaattgcggctatagtgccgatttagtgtgtactgtgtagtgtaatggaatttgcacaaaccgctatttttttgcgatccgctcaaaaaca |
26957472 |
T |
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| Q |
567 |
tatgtaagcaaattgaaaagggaacaaatagtgtacct |
604 |
Q |
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| T |
26957473 |
tatgtaagcaaattgaaaagggaacaaattgtgtacct |
26957510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 26956949 - 26957177
Alignment:
| Q |
16 |
catagggaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaatttaaat |
115 |
Q |
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| T |
26956949 |
catagggaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaatttaaat |
26957048 |
T |
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| Q |
116 |
tatcaccatacttataagtcaagtttctttttgtcaaatagaagctgtagcactgctatagtgttacagcacagcggaatttgaataaacagtcgttgtt |
215 |
Q |
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| T |
26957049 |
tatcaccatacttataagtcaagtttctttttgtcaaatagaagctgtagcactgctatagtgttacagcacagcggaatttgaataaacagtcgttgtt |
26957148 |
T |
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| Q |
216 |
caatgatacgcgatttagtacaaaatgtt |
244 |
Q |
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| T |
26957149 |
caatgatacgcgatttagtacaaaatgtt |
26957177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 34374185 - 34374137
Alignment:
| Q |
211 |
ttgttcaatgatacgcgatttagtacaaaatgttatcacattgtagcta |
259 |
Q |
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| T |
34374185 |
ttgttctatgatacgcgatttggtacaaaatgttgtcaaattgcagcta |
34374137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 41777193 - 41777104
Alignment:
| Q |
20 |
gggaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaat |
109 |
Q |
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| T |
41777193 |
gggaacctcttgagtaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaat |
41777104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 456
Target Start/End: Original strand, 46714609 - 46714641
Alignment:
| Q |
424 |
cggaatttgcacaaatcactattttccgtgatc |
456 |
Q |
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| T |
46714609 |
cggaatttgcacaaatctctattttccgtgatc |
46714641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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