View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_10 (Length: 385)
Name: NF16502_low_10
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 55929992 - 55929697
Alignment:
| Q |
20 |
cctaggttgtccgatgtccatccagaatccaggcaggagcattgcatatagctttttctctgcagcaatcttgggaaaaatttctttttcgatagaagtg |
119 |
Q |
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| T |
55929992 |
cctaggttgtccgatgtccatccagaatccaggcaggagcattgcatatagctttttctctgcagcaatcttgggaaaaatttctttttcgatagaagtg |
55929893 |
T |
|
| Q |
120 |
ggcctcagttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttct |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55929892 |
ggcctcagttcaatccgatccaaaacagaggggttcaataggtaaattccagcattgattttgttaccaacaaag-ttttaggtttttcaacaaatttct |
55929794 |
T |
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| Q |
220 |
caacctgccctgttgtttcctccaacacagccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaattatatgattggatgatct |
316 |
Q |
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| T |
55929793 |
caacctgccctgctgtttcctccaacacagccacaccatattttgatggctcatcaacctgcacaagtagatgaaaaattatatgattggatgatct |
55929697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 55929670 - 55929616
Alignment:
| Q |
316 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttg |
370 |
Q |
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| T |
55929670 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttg |
55929616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 34585837 - 34585560
Alignment:
| Q |
20 |
cctaggttgtccgatgtccatccagaatccaggcaggagcattgcatatagctttttctctgcagcaatcttgggaaaaatttctttttcgatagaagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
34585837 |
cctaggttgtccgatgtccatccagaatccaggcaggaccattgcatatagctttttctctgcagcgatctttggaaaaatttctttttcgatagaagtg |
34585738 |
T |
|
| Q |
120 |
ggcctcagttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttct |
219 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
34585737 |
ggcctcagttcaattcgatccaaaacagaggggttcaataggtaaattccagcattgattttgttaccaacaaacaactttggtttttcaacaaatttct |
34585638 |
T |
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| Q |
220 |
caacctgccctgttgtttcctccaacacagccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaa |
297 |
Q |
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| T |
34585637 |
caacctgccctgttgtctcctccataacaaccacaccatattttgatggctcatcaacctacagaagtagacgaaaaa |
34585560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 297
Target Start/End: Complemental strand, 30921420 - 30921150
Alignment:
| Q |
27 |
tgtccgatgtccatccagaatccaggcaggagcattgcatatagctttttctctgcagcaatcttgggaaaaatttctttttcgatagaagtgggcctca |
126 |
Q |
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||||| ||||||||||||||||||||||| | |||||||||||||||||| | ||| |||||||| ||||| | ||||| || ||||||||||| |||| |
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| T |
30921420 |
tgtccaatgtccatccagaatccaggcagaaccattgcatatagctttttgtttgctgcaatctttggaaacacctctttctcaatagaagtgggtctca |
30921321 |
T |
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| Q |
127 |
gttcaatccgatcaaaaacagaggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctg |
226 |
Q |
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||||||| |||| ||||| ||||||||||||||||| || |||| |||||||||||| |||||||| || || ||||| || ||||||||||||||||| |
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| T |
30921320 |
gttcaatatgatccaaaactgaggggttcaataggtagatcccagcattgattttgttgccaacaaacaacttgggtttctccacaaatttctcaacctg |
30921221 |
T |
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| Q |
227 |
ccctgttgtttcctccaacacagccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaa |
297 |
Q |
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||| || || || |||| ||| | ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
30921220 |
cccggtagtctcttccataacaactacaccatattttgatggctcatcaacctgcacaagtagttgaaaaa |
30921150 |
T |
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