View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_12 (Length: 368)
Name: NF16502_low_12
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 2048879 - 2049216
Alignment:
| Q |
17 |
tttaaatatttaagtgaaaaataattattgttatttttaaatgaaaaatcattgttatgattgcactaaatggaaaccattaacataactctgtttataa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2048879 |
tttaaatatttaagtgaaaaataattattgttatttttaaatgaaaaatcattcttatgattgcactaaatggaaaccattaacataactctgtttataa |
2048978 |
T |
|
| Q |
117 |
aaattaaataagcttgattatgtttatcaatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaa |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2048979 |
aaattaaataagcttgattatgtttattaatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaa |
2049078 |
T |
|
| Q |
217 |
aatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaaagcctgaccaagggggcagcagtt |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2049079 |
aatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaaggcctgaccaagggggcagcagtt |
2049178 |
T |
|
| Q |
317 |
ggcctgttgatcttatccttttccctatccatggaagt |
354 |
Q |
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| T |
2049179 |
ggcctgttgatcttatccttttccctatccatggaagt |
2049216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 2053538 - 2053639
Alignment:
| Q |
207 |
ttaactctaaaatctacagccacaataatgaagataaggataatgtgaagttatttaaatagtgatatttatttctcttacatcaaagcctgaccaaggg |
306 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2053538 |
ttaactctaaaatctacagccacaattatgaacataaggaaaatgtgaagttctataaatagtgatatttatttctcttacatcaaagcctgaccaaagg |
2053637 |
T |
|
| Q |
307 |
gg |
308 |
Q |
| |
|
|| |
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|
| T |
2053638 |
gg |
2053639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 2045261 - 2045374
Alignment:
| Q |
145 |
aatgagttttttctcccacacagatattcatatttattatgctttatattcataaggaaattttaactctaaaatctacagccacaataatgaagataag |
244 |
Q |
| |
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|||||||||||| ||||||| | |||||||||||||||||||||| ||||||| | || |||||||||| |||||| || ||||||||||| |||||||| |
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| T |
2045261 |
aatgagttttttgtcccacatatatattcatatttattatgctttgtattcatcaagagattttaactcaaaaatcaacggccacaataataaagataag |
2045360 |
T |
|
| Q |
245 |
gataatgtgaagtt |
258 |
Q |
| |
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|| ||||||||||| |
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|
| T |
2045361 |
gaaaatgtgaagtt |
2045374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 2036301 - 2036388
Alignment:
| Q |
171 |
ttcatatttattatgctttatattcataaggaaattttaactctaaaatctacagccacaataatgaagataaggataatgtgaagtt |
258 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||| || |||||||||||| |||||| |||||||||||| ||||||||||| |
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|
| T |
2036301 |
ttcatatttattatgctttgtattcataaagagattttaagtcaaaaatctacagcaacaatattgaagataaggaaaatgtgaagtt |
2036388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 2019567 - 2019505
Alignment:
| Q |
291 |
aaagcctgaccaagggggcagcagttggcctgttgatcttatccttttccctatccatggaagt |
354 |
Q |
| |
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||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2019567 |
aaagcctgaccaaggaggcggctgttggcctgttgatcttatcc-tttccctatccatggaagt |
2019505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 2056491 - 2056536
Alignment:
| Q |
90 |
aaaccattaacataactctgtttataaaaattaaataagcttgatt |
135 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2056491 |
aaaccattaacataaatctgtttataaaatttaaataagcttgatt |
2056536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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