View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16502_low_13 (Length: 364)

Name: NF16502_low_13
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16502_low_13
NF16502_low_13
[»] chr8 (5 HSPs)
chr8 (17-154)||(12664356-12664493)
chr8 (282-353)||(12664537-12664608)
chr8 (193-296)||(32574468-32574570)
chr8 (193-251)||(4638727-4638786)
chr8 (212-254)||(27015389-27015431)
[»] chr6 (2 HSPs)
chr6 (193-251)||(19962466-19962525)
chr6 (193-296)||(1619780-1619882)
[»] chr3 (1 HSPs)
chr3 (193-251)||(44198144-44198203)
[»] chr4 (2 HSPs)
chr4 (193-287)||(1975469-1975564)
chr4 (212-254)||(35534411-35534453)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 12664356 - 12664493
Alignment:
Q  17 acaacaatcaacaaatttcagtaaaatcatttataacaacgaatcacttataagatcattgcttcattgcgaattcgcacttcccattcaaaaattgatg 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12664356 acaacaatcaacaaatttcagtaaaatcatttataacaaagaatcacttataagatcattgcttcattgcaaattcgcacttcccattcaaaaattgatg 12664455  T
Q  117 actgtcgaatcagtgcaaatgtgagatacaaccctttt 154  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12664456 actgtcgaatcagtgcaaatgtgagatacaaccctttt 12664493  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 12664537 - 12664608
Alignment:
Q  282 tatagtatattagattagttaaggaagcatatgatatccaattaattgaccaaaatctcacgtataattcat 353  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12664537 tatagtatattagattagataaggaagcatatgatattcaattaattgaccaaaatctcacgtataattcat 12664608  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 32574468 - 32574570
Alignment:
Q  193 tatatatagggaaagacagcatttactaatttaccaaaatacccctatgagggcaaaatggtnnnnnnnnntggacaagaattgtcctatatagtatatt 292  Q
    |||||| || ||||| ||||| |||||||||||||||||||||||||| |||||||||||||         |||||||||||||||||||||||| || |    
T  32574468 tatatagagagaaaggcagcaattactaatttaccaaaatacccctataagggcaaaatggt-aaaaaaaatggacaagaattgtcctatatagtttagt 32574566  T
Q  293 agat 296  Q
    ||||    
T  32574567 agat 32574570  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 4638727 - 4638786
Alignment:
Q  193 tatatataggg-aaagacagcatttactaatttaccaaaatacccctatgagggcaaaat 251  Q
    ||||||||||| ||||| ||||||| |||||||||| |||||||||||| ||||||||||    
T  4638727 tatatataggggaaagagagcattttctaatttacctaaatacccctataagggcaaaat 4638786  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 27015389 - 27015431
Alignment:
Q  212 catttactaatttaccaaaatacccctatgagggcaaaatggt 254  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  27015389 catttactaatttaccaaaatacccccataagggcaaaatggt 27015431  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 19962525 - 19962466
Alignment:
Q  193 tatatataggg-aaagacagcatttactaatttaccaaaatacccctatgagggcaaaat 251  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  19962525 tatatataggggaaaggcagcatttactaatttaccaaaatacccctataagggcaaaat 19962466  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 1619780 - 1619882
Alignment:
Q  193 tatatatagggaaagacagcatttactaatttaccaaaatacccctatgagggcaaaatggtnnnnnnnnntggacaagaattgtcctatatagtatatt 292  Q
    |||||| || ||||| || || |||||||||||||||||||||||||| |||||||||||||         |||||||||||||||||||||||| || |    
T  1619780 tatatagagagaaaggcaacaattactaatttaccaaaatacccctataagggcaaaatggt-aaaaaaaatggacaagaattgtcctatatagtttagt 1619878  T
Q  293 agat 296  Q
    ||||    
T  1619879 agat 1619882  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 44198144 - 44198203
Alignment:
Q  193 tatatata-gggaaagacagcatttactaatttaccaaaatacccctatgagggcaaaat 251  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  44198144 tatatatatgggaaaggcagcatttactaatttaccaaaatacctctataagggcaaaat 44198203  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 1975469 - 1975564
Alignment:
Q  193 tatatataggg-aaagacagcatttactaatttaccaaaatacccctatgagggcaaaatggtnnnnnnnnntggacaagaattgtcctatatagt 287  Q
    ||||||||||| |||| ||||| ||||||||||||||||||| ||| || |||||||||| ||         ||||||||||||||||||||||||    
T  1975469 tatatatagggcaaaggcagcaattactaatttaccaaaataaccccataagggcaaaatagtaaaaaaaaatggacaagaattgtcctatatagt 1975564  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 35534453 - 35534411
Alignment:
Q  212 catttactaatttaccaaaatacccctatgagggcaaaatggt 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  35534453 catttactaatttaccaaaatacccctataaaggcaaaatggt 35534411  T

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