View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_14 (Length: 355)
Name: NF16502_low_14
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_14 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 124313 - 123984
Alignment:
| Q |
17 |
acaggttatccactattaagtactacattcttaatccattaataattcacctaataatggctgattccaattcaacttggcattgtatagataaatatga |
116 |
Q |
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| T |
124313 |
acaggttatccactattaagtactacattcttaatctattaataattcacctaataatggctgattccaattcaacttggcattgtatagataaatatga |
124214 |
T |
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| Q |
117 |
actcggagtctctaattcatgga-tgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaacaagggtaattagtcattaatata |
215 |
Q |
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| T |
124213 |
actcggagtctctaattcatggaatgctacaaagctatttatcaatcctgaaataccagaggtgcttcaattcaaacaagggtaattagtcattaatata |
124114 |
T |
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| Q |
216 |
ttcacattcaagtatattaagcaaagtattgactttgatgatttggttttaggttgcctcttgatgacgcaggatcgtcacaaagtcagcaactaagtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
124113 |
ttcacattcaagtatattaagcaaagtattgactttgatgatttggttttaggttgcctcttgatgacacaggatcgtcacaaagtcagcaactaagtgt |
124014 |
T |
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| Q |
316 |
tcaatctcaaatgtttagcccatcttcatc |
345 |
Q |
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| T |
124013 |
tcaatctcaaatgtttagcccatcttcatc |
123984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 22079045 - 22078940
Alignment:
| Q |
97 |
cattgtatagataaatatgaactcggagtctctaattcatgga-tgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaacaag |
195 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||| |||||| ||||| ||||||||||||||| | | ||||||||| |||||||||||| |
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| T |
22079045 |
cattgtatagataaatatgaactcggggtctctaatgcatggaatgctaccaagctgtttatcaatcctgaattcctcgaggtccttgaattcaaacaag |
22078946 |
T |
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| Q |
196 |
ggtaat |
201 |
Q |
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|||||| |
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| T |
22078945 |
ggtaat |
22078940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 23698106 - 23698015
Alignment:
| Q |
101 |
gtatagataaatatgaactcggagtctctaattcatgga-tgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaa |
191 |
Q |
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| T |
23698106 |
gtatagataagtacgaactcagagtctctaatgcatggaatgctacaaagctatttatcaatcctgaaatccctgaggtccttcaattcaaa |
23698015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 23697928 - 23697848
Alignment:
| Q |
262 |
ttttaggttgcctcttgatgacgcaggatcgtcacaaagtcagcaactaagtgttcaatctcaaatgtttagcccatcttc |
342 |
Q |
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|||||| ||||||||||||||| || || |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23697928 |
ttttagtttgcctcttgatgacccaacattgtcacagagtcagcaactaagtgttcaatctcagatgtttatcccatcttc |
23697848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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