View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16502_low_17 (Length: 321)
Name: NF16502_low_17
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_17 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 43070803 - 43070535
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43070803 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
43070705 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070704 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
43070605 |
T |
|
| Q |
236 |
tcagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctggcatctagagggt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
43070604 |
tcagggtgctgtcatggtgctgttggcagtttagttgttggtttcagctgctggctagcatctatagggt |
43070535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 36 - 305
Target Start/End: Original strand, 9044504 - 9044771
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9044504 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
9044602 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9044603 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcagg-ttttggtggtt |
9044701 |
T |
|
| Q |
236 |
tcagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctggcatctagagggt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
9044702 |
tcagggtgctgtcatggtgctgttggcagtttagttgttggtttcagctgctggctggcatctatagggt |
9044771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 30441966 - 30441698
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30441966 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
30441868 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
235 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30441867 |
agttattcaacattccttacgtttaattcctttattttgtgcgggttctgctgtcattttgggagcttttctggtggtgttgtgcaggtttttggtggtt |
30441768 |
T |
|
| Q |
236 |
tcagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctggcatctagagggt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
30441767 |
tcagggtgctgtcatggtgttgttggcattttagttgttggtttcagctgctggctagcatctatagggt |
30441698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 7472905 - 7472775
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7472905 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
7472807 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7472806 |
agttattcaacattccttacgttcaattcctt |
7472775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 7472772 - 7472661
Alignment:
| Q |
194 |
ttgggagcttttctggtggtgctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
7472772 |
ttgggagcttttctggtggtgctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggcagtttagttgttggtttcagctgctggctag |
7472673 |
T |
|
| Q |
294 |
catctagagggt |
305 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
7472672 |
catctatagggt |
7472661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 18354728 - 18354460
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18354728 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
18354630 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18354629 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
18354530 |
T |
|
| Q |
236 |
tcagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctggcatctagagggt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||| ||||| |
|
|
| T |
18354529 |
tcagggtgctgtcatggtgctgttggcagtttagttgttggtttcagctgctggcttggatctatagggt |
18354460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 37 - 305
Target Start/End: Complemental strand, 23348400 - 23348133
Alignment:
| Q |
37 |
aaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattta |
136 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23348400 |
aaacacaccaatatgtccattaatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattaaaaatatgattgcgaagtatattta |
23348302 |
T |
|
| Q |
137 |
gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggttt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348301 |
gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggttt |
23348202 |
T |
|
| Q |
237 |
cagggtgctgtcatggtgttgttggcagtttagttgttggtttcagctattggctggcatctagagggt |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
23348201 |
cagggtgctgtcatggtgctgttggcagtttagttgttggtttcagctgctggctagcatctatagggt |
23348133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 266
Target Start/End: Original strand, 12742389 - 12742618
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12742389 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
12742487 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742488 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt |
12742587 |
T |
|
| Q |
236 |
tcagggtgctgtcatggtgttgttggcagtt |
266 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |
|
|
| T |
12742588 |
tcagggtgttgtcatggtgctgttggcagtt |
12742618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 10328447 - 10328285
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10328447 |
caaacacaccaatatgtccattgatgttgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
10328349 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328348 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
10328285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 19881531 - 19881369
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19881531 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
19881433 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881432 |
agttattcaacatttcttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
19881369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 53972707 - 53972545
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53972707 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
53972609 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53972608 |
agttattcaacattccttaagttcaattcatttatcttgcgcgggttctgctgtcattttggga |
53972545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 50829555 - 50829466
Alignment:
| Q |
174 |
gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggc |
262 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
50829555 |
gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc |
50829466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 50846298 - 50846387
Alignment:
| Q |
174 |
gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggc |
262 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
50846298 |
gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc |
50846387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 1353 - 1515
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1353 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
1451 |
T |
|
| Q |
136 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1452 |
agttattcaacattccttaagttcaattcctttatcttgcgatggttctgctgtcattttggga |
1515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 21674846 - 21674755
Alignment:
| Q |
115 |
atatgattgctaagtatatttagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttct |
207 |
Q |
| |
|
|||| ||||| |||| ||||| |||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21674846 |
atattattgccaagttgatttatttattcaacatttcttaccct-aattcctttatctggcgcgggttctgctgtcattttgggagcttttct |
21674755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 33688159 - 33688074
Alignment:
| Q |
36 |
caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgc |
124 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
33688159 |
caaacacaccaatatgtcgattgatgttgaccttt-aatgattgtgctttcctcttcgat--gtgtttataaattgaaaatatgattgc |
33688074 |
T |
|
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