View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_18 (Length: 313)
Name: NF16502_low_18
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_18 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 226806 - 227086
Alignment:
| Q |
18 |
aattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctctgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
226806 |
aattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccgga |
226905 |
T |
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| Q |
118 |
atgctgttaccatcttcagaagacgcttcaatatccttgaaggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgc |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226906 |
atgctgttgccatcttcagaagacgcttcaatatccttgaaggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgc |
227005 |
T |
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| Q |
218 |
tatttctttgttgttcattcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactatctctg |
298 |
Q |
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| T |
227006 |
tatttctttgttgttcgttcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactatttctg |
227086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 14590572 - 14590292
Alignment:
| Q |
18 |
aattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctctgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14590572 |
aattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccgga |
14590473 |
T |
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| Q |
118 |
atgctgttaccatcttcagaagacgcttcaatatccttgaaggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgc |
217 |
Q |
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| T |
14590472 |
atgctgttgccatcttcagaagacgcttcaatatccttgaaggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgc |
14590373 |
T |
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| Q |
218 |
tatttctttgttgttcattcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactatctctg |
298 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14590372 |
tatttctttgttgttcgttcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactatttctg |
14590292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 187951 - 187877
Alignment:
| Q |
219 |
atttctttgttgttcattcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactat |
293 |
Q |
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|||||||||||||||||| ||||| |||||||| |||| || ||||||||||| ||||||||||| |||||||| |
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| T |
187951 |
atttctttgttgttcattaaaatcgacaactttgccttatgcattaacaactttctcacacattttaaccactat |
187877 |
T |
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