View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_2 (Length: 579)
Name: NF16502_low_2
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 129 - 564
Target Start/End: Original strand, 28159057 - 28159491
Alignment:
| Q |
129 |
tttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159057 |
tttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
28159156 |
T |
|
| Q |
229 |
nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatatatgggacttagcattgaaaat |
328 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159157 |
tttttttgttgttt-atggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatatatgggacttagcattgaaaat |
28159255 |
T |
|
| Q |
329 |
ggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaatttaatcttcatatcaatgtatatttgctcacnnnnn |
428 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28159256 |
ggctatcacatgacttcttttactcaaaatgaaacttatgtcatgtagtacaaagtgagggaatttaatcttcatatcaatgtatattagctcacttttt |
28159355 |
T |
|
| Q |
429 |
nnacgtgttaattttcatatccatgtatatttagtttggtctatttaaaactttcaaatatttatatatttcagtgaagaagctaagttccattcttgtt |
528 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
28159356 |
ttacgtgttaattttcatatccatgtatatttagtttggtctatttaaaactttcaaatatttatatagttcagttaagaagctgagttccattcttgtt |
28159455 |
T |
|
| Q |
529 |
cagaaaaatgaagctgagttccatttataatatttt |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28159456 |
cagaaaaatgaagctgagttccatttataatatttt |
28159491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 28158922 - 28159030
Alignment:
| Q |
6 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28158922 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
28159021 |
T |
|
| Q |
106 |
cgacgcatt |
114 |
Q |
| |
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|||||||| |
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| T |
28159022 |
tgacgcatt |
28159030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 26925817 - 26925883
Alignment:
| Q |
14 |
gaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaatta |
80 |
Q |
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|||||||||||| |||| || |||||||||| | | |||||| |||||||||||||||||||||| |
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| T |
26925817 |
gaaaataatattgattatgagagaattgttacattaactagtacattaaggcttatatagccaatta |
26925883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 130 - 564
Target Start/End: Complemental strand, 14359332 - 14358898
Alignment:
| Q |
130 |
ttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagaggn |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
14359332 |
ttaggagttgtgttattaccagcttgttgtgggtgtttttggctgtttttttgttatctttaaggtttttagctttgggtgtttgaagttgttcagaggt |
14359233 |
T |
|
| Q |
230 |
nnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatatatgggacttagcattgaaaatg |
329 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14359232 |
ttttttgttgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatatattggacttagcattgaaaatg |
14359133 |
T |
|
| Q |
330 |
gctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaatttaatcttcatatcaatgtatatttgctcacnnnnnn |
429 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14359132 |
gctatcacatggcttcttttactcaaaataaaacttacgtcatgtagtacaaattgagggaatttaatcttcatatcaatgtatatttgctcactttttt |
14359033 |
T |
|
| Q |
430 |
nacgtgttaattttcatatccatgtatatttagtttggtctatttaaaactttcaaatatttatatatttcagtgaagaagctaagttccattcttgttc |
529 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
14359032 |
tacttgttaattttcatatccatgtatatttagtttggtctatttaaaactttcaaatatttatatatttcagttaagaagctgagttccattcttgttc |
14358933 |
T |
|
| Q |
530 |
agaaaaatgaagctgagttccatttataatatttt |
564 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
14358932 |
agaaaaatgaagccgagttccatttataatatttt |
14358898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 14359404 - 14359329
Alignment:
| Q |
6 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359404 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
14359329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 6163362 - 6162977
Alignment:
| Q |
6 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctt-atatagccaattagactaacgattgtcttaacgagtt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
6163362 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctttatatagccaattagactaacggttgttttaacgagtt |
6163263 |
T |
|
| Q |
105 |
tcgacgcattgnnnnnnnnnccagttt-aggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagct |
203 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
6163262 |
tcgacgcattgttttttt---cagttttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagct |
6163166 |
T |
|
| Q |
204 |
ttgggtgtttggagttgttcagaggnnnnnnngc-tgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtc |
302 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6163165 |
ttgggtgtttggagttgttcagaggttttttttcctgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtc |
6163066 |
T |
|
| Q |
303 |
tatatatgggacttagcattgaaaatggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaa |
391 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6163065 |
tatatgtgggacttagcattgaaaatggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaa |
6162977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 4839940 - 4839831
Alignment:
| Q |
6 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4839940 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctaatagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
4839841 |
T |
|
| Q |
106 |
cgacgcattg |
115 |
Q |
| |
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|||||||||| |
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|
| T |
4839840 |
cgacgcattg |
4839831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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