View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_20 (Length: 293)
Name: NF16502_low_20
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 30475538 - 30475286
Alignment:
| Q |
20 |
cgccactaggattatattcattcatctctttcaaagctaccaccacagcatcgtatactgcttcaccaatgctttctttcagctcattcagcttttcatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30475538 |
cgccactaggattatattcattcatctctttcaaagctaccaccacagcatcgtatactgcttcaccaatgctttctttcagctcattcagcttttcatc |
30475439 |
T |
|
| Q |
120 |
ttcttcattaataacctgctacaataacaaatgtgttaaaactgatatccaaatgcaagtaaagaatttatgataaactgctacatatttccccaagtat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30475438 |
ttcttcattaataacctgctacaataacaaatgtgttaaaactgatatccaaatgcaagtaaagaatttatgataaacggctacatatttccccaagtat |
30475339 |
T |
|
| Q |
220 |
tttagggatgattagaagttaaaaatacactatttgccctagttaatatttac |
272 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30475338 |
tttagggatgattagaagttaaaaatacactattttccctagttaatatttac |
30475286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 30457064 - 30456952
Alignment:
| Q |
22 |
ccactaggattatattcattcatctctttcaaagctaccaccacagcatcgtatactgcttcaccaatgctttctttcagctcattcagcttttcatctt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30457064 |
ccactaggattatattcattcatctctttcaaagctatcgccacggcatcatatgcggcttcaccaatgctttctttcagctcattcagtttttcatctt |
30456965 |
T |
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| Q |
122 |
cttcattaataac |
134 |
Q |
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||| || ||||| |
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| T |
30456964 |
gttcgttgataac |
30456952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 34204845 - 34204745
Alignment:
| Q |
22 |
ccactaggattatattcattcatctctttcaaagctaccaccacagcatcgtatactgcttcaccaatgctttctttcagctcattcagcttttcatctt |
121 |
Q |
| |
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||||| |||||||||||||| ||||||||||| ||| |||||||||| | ||| ||| |||| || || | | |||| ||||||||||||||||||| |
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| T |
34204845 |
ccacttggattatattcatttatctctttcaatgctgccaccacagctttgtaaacttcttcgcccatctcgtttctcagttcattcagcttttcatctt |
34204746 |
T |
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| Q |
122 |
c |
122 |
Q |
| |
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| |
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| T |
34204745 |
c |
34204745 |
T |
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